PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g23250.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 288aa    MW: 30947.6 Da    PI: 8.5005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g23250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11221266655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  Vradi08g23250.1 221 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 266
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005215265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-15218281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-11219270No hitNo description
Gene3DG3DSA:4.10.280.104.6E-14220278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-13221271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8221266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTHAPTGLTR YGSAPGSLLT TTVDALIGGS RPTPTPTPYY SGGDSSDSTC KDQTSYHNHA  60
LGSALLRQKS SPAGFLSHLA STPTAPTPNH NHNGAGFTIT RGSRLKSQLS FTGHCQESLC  120
GGDNTNNVVL GDHATFGMEP WDSSHSHSNS IAFSAPPTKR SKSSNSSDQD ILHCLNALES  180
QFSLPQTTLE MATVEKLLHI PEDSVPCKIR AKRGCATHPR SIAERERRTR ISGKLKKLQD  240
LVPNMDKQTS YADMLDLAVQ HIKGLQTQVQ KLHKELENCT CGCTQSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g23250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513572.10.0transcription factor bHLH128
SwissprotQ8H1024e-69BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1S3V5V80.0A0A1S3V5V8_VIGRR; transcription factor bHLH128
STRINGXP_007142611.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.17e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]