 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vradi08g20060.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
LBD |
| Protein Properties |
Length: 173aa MW: 18978.9 Da PI: 9.519 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi08g20060.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 98 | 9.2e-31 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+C++C+vlr++C+++C+l+ ++ p++q++++ +v+k+FG++ ++++l+a+p ++r+++++sl+yeA r+ +Pv+Gavg+++++++ql+q
Vradi08g20060.1 2 SCNGCRVLRKGCSENCMLRHCLqlienPQAQAHATLFVAKFFGRAALMSFLSAVPANQRSALFQSLLYEAVGRTINPVNGAVGLLWSGNWQLCQ 95
6********************************************************************************************* PP
DUF260 90 lkaelal 96
+ +e +l
Vradi08g20060.1 96 MGVEKVL 102
9888665 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 173 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSENCMLR HCLQLIENPQ AQAHATLFVA KFFGRAALMS FLSAVPANQR 60
SALFQSLLYE AVGRTINPVN GAVGLLWSGN WQLCQMGVEK VLRGGAAFLS SVDVHHQHHV 120
TERVMIAGGT LCHQAKKQRV GTTSQESETF YMGRKPQDSA PQSQRNLLTL FF*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015041 | 5e-99 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
