PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g20010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 726aa    MW: 80567.1 Da    PI: 4.9307
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g20010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-106496891055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      rrRR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Vradi08g20010.1 649 RRRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 689
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.402639688IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-14639704IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12644698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-12645694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-8649689IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00466655693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MESSQQISEE WGSLCGLHTT EEADFMAQLF PGTYCSVTEK HYGNTTFGFW PAHESKTVTM  60
KATNNNSYFL PNVTDINLCF SQGSSSSIDS GNSIFSTTST GPYYCDPATN FDSVSMAFFL  120
GDAQFSPHNF HCYDNSSQQI NENTDEESSL DPVTLADNNL QAKREHEMMV SEYAHEDRSE  180
NLENLTKRLR NSKEVSKTLR STKLKKNSKS ASTNKNEDDR SLNLEGLGCF SQGDSNASLK  240
PNGGALKDPA PPSLLRKSRA TKGPATDPQS LYARVDISTM LDEAVQYVKF LQLQIKVTIR  300
KTFSPDFPTQ HYDKMLNWAQ ESRIISIHEC LQNLELKTEL NDEEYVSTVL ILQVGFFFNN  360
SRRRREESHP RKKMDPTEQI SEEWSSLSGF CTAEEADFMS QLLDNCSLPE NLCGNFHLGI  420
PSATWPGHES TILTVTSIND SPYFPTTADN SNSNYLCFSQ GSCSTSDSSN IFPATSGNKH  480
CLNDPVANIG YVSMGFAKFS PYNVQGSDSQ QMNGYTDQDL GPEVIADKNS QDHQECEVLV  540
SEATTEDITT NLEKSGKRSR GSMQVRKSKK NAKSVKKPKS DSISNSEEGR SPDLHGCCSD  600
DDDSNASQEL NEGGSPNLSL EDSTSLKLKG KKSTASRGSA TDPQSVYARR RRERINERLK  660
ILQNLVPNGT KVDISTMLEE AVQYVKFLQL QIKLLSSDDL WMYAPIAYNG MNIGLDLNIT  720
PTKQP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361372RRRREESHPRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g20010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022640693.10.0transcription factor bHLH84
TrEMBLA0A4D6N8I10.0A0A4D6N8I1_VIGUN; Aprataxin
STRINGXP_007143115.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-43bHLH family protein