PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g19770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 190aa MW: 21357.4 Da PI: 9.5554 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.2 | 8.8e-23 | 19 | 67 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ +n+sn qvtfskRr g++KKA+EL++LC+a va+++fs+ k++ + Vradi08g19770.1 19 KKMSNESNLQVTFSKRRSGLFKKASELCTLCGAHVALVVFSPGEKVFSF 67 5689***************************************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.6 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-33 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.95E-34 | 12 | 80 | No hit | No description |
SuperFamily | SSF55455 | 7.19E-28 | 12 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-19 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-24 | 21 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-19 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-19 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MAMDSGAKKS RGRQKIEMKK MSNESNLQVT FSKRRSGLFK KASELCTLCG AHVALVVFSP 60 GEKVFSFGHP NVDAVIDRFL GRAPVQDSGT MQFIDAHRIS NVRDLNKQLT QVNELLETER 120 KRGEELSRLR KEAQELMWWT RPTEELSVEQ MEQYKTALEE LKKHQQHHGF DNMGMGGYGP 180 GPAPAGGFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-15 | 12 | 90 | 2 | 80 | MEF2 CHIMERA |
6byy_B | 5e-15 | 12 | 90 | 2 | 80 | MEF2 CHIMERA |
6byy_C | 5e-15 | 12 | 90 | 2 | 80 | MEF2 CHIMERA |
6byy_D | 5e-15 | 12 | 90 | 2 | 80 | MEF2 CHIMERA |
6bz1_A | 5e-15 | 12 | 94 | 2 | 84 | MEF2 CHIMERA |
6bz1_B | 5e-15 | 12 | 94 | 2 | 84 | MEF2 CHIMERA |
6bz1_C | 5e-15 | 12 | 94 | 2 | 84 | MEF2 CHIMERA |
6bz1_D | 5e-15 | 12 | 94 | 2 | 84 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g19770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014511964.2 | 1e-117 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 4e-63 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S3V1E3 | 1e-116 | A0A1S3V1E3_VIGRR; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_007143149.1 | 1e-113 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-65 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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