PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g19280.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 279aa    MW: 32149.9 Da    PI: 8.8834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g19280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.9e-0894146155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +r +h e E++RR+++       r+llP       ++K s ++   +  +YIk+L+
  Vradi08g19280.1  94 KRWMHRETEKQRRQEMTRLCTDFRSLLPLqY---IKGKRSISDHMHEGANYIKHLE 146
                      5779*************************66...********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.04E-791150No hitNo description
SuperFamilySSF474594.19E-1292173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.87793145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-894163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-594146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MNEGNQHIIL STSDNDEKKI IRREVEKKKE KENVCCRFIS PLFTPFRTRQ RLSLLLYFLI  60
PATAQMGTTK GEQRGKLPAW TKEDYKTTTM DENKRWMHRE TEKQRRQEMT RLCTDFRSLL  120
PLQYIKGKRS ISDHMHEGAN YIKHLENKVK ELQAKRDEFK KSSNLSPVVV SDSGSFSTTD  180
LPICVIVHPF PGGIQIKCSY SFRKYVFPLS RVIDMVLKEG LDVVNCTSTK TDDSFIHTIR  240
IEVPHTMTGT NYTELQKKLV EAISSSCSEE ILSESENC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g19280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511945.11e-161transcription factor bHLH36
TrEMBLA0A1S3V0W31e-160A0A1S3V0W3_VIGRR; transcription factor bHLH36
STRINGXP_007143342.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.13e-32bHLH family protein