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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vradi08g19210.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 240aa MW: 27476.7 Da PI: 9.2449 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi08g19210.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 93.8 | 7.8e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ie+ + rqvtfskRrng+lKKA+ELSvLCda+vavi+fs++g+lye+ss
Vradi08g19210.1 9 KKIEDATSRQVTFSKRRNGLLKKAYELSVLCDAQVAVIVFSQNGRLYEFSS 59
68***********************************************96 PP
|
| 2 | K-box | 47.3 | 8.7e-17 | 83 | 152 | 11 | 80 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80
+ ++l+ e+a++ ++i+ L+ ++R+llG++++ +s+ eL+++e+qL++sl ++R++K+ ll++ +l
Vradi08g19210.1 83 DDYIQQLKLESANMAEKIQLLEISKRKLLGQSVSCCSYDELKEIEDQLQRSLLRVRQRKESNLLQENAKL 152
5678999*****************************************************9999887665 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 1.6E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.791 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.7E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 9.16E-33 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 7.25E-44 | 3 | 75 | No hit | No description |
| Pfam | PF00319 | 2.2E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.7E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.7E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 10.183 | 86 | 199 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 2.9E-13 | 87 | 153 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 240 aa
Download sequence Send
to blast |
MVRGKVQMKK IEDATSRQVT FSKRRNGLLK KAYELSVLCD AQVAVIVFSQ NGRLYEFSSS 60
NMSKILERYR EYTKDVPTNK FGDDYIQQLK LESANMAEKI QLLEISKRKL LGQSVSCCSY 120
DELKEIEDQL QRSLLRVRQR KESNLLQENA KLTEMILVFP FTLPPLSTMP PPHTFTSPIS 180
LKLNEDNFLV WKHQALATVT GLHLMKFLES SSYPPKYVTL DAAASDTVNP LYLHHLQQD*
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| Functional Description ? help
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| Source |
Description |
| UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015041 | 1e-117 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
