PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g19190.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 396aa    MW: 42083.3 Da    PI: 8.7129
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g19190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.67.7e-37132224295
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 
                      +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++        +  +ss+++   ++
  Vradi08g19190.1 132 TVAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsV--GGTLKIPTSSAARPHGED 223
                      789*************************************************************8888844421..111111111111111111 PP

              TCP  95 a 95 
                      +
  Vradi08g19190.1 224 N 224
                      1 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.512138192IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-29138223IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
SVFYVVSVPI LFILYQFSFI VFNYQNPSSN SELVSNPCSA RKLQTRSTVL NSFALPSSSS  60
RCKTCKKTME SNPTHDGDDT SEKLSPPMVD RPESSSPSPS SPQALQMKEE AMDAEQGVDM  120
SLPVNVIPMP PTVAKRPSKD RHTKVEGRGR RIRMPATCAA RIFQLTRELG HKSDGETIRW  180
LLEHAEPAII EATGTGTVPA IAVSVGGTLK IPTSSAARPH GEDNPKKRRR RASNSEFIDV  240
NENHVSVSSG LAPIAQTAYG GVASGGGGGV VPLWNGNGSG PFFMFPNASN PPQYWAIPAT  300
AAPFFNVQAR PISGFVSALQ MHEQDKPSSN GCASDSVNSS STMGSSMSSV SVTTSAAASS  360
SSAATTTQIL RDFSLEIYDK KELQFLGQAP PSSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225230KKRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g19190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513701.10.0transcription factor TCP19
SwissprotQ9LT894e-78TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A1S3V5Y10.0A0A1S3V5Y1_VIGRR; transcription factor TCP19
STRINGXP_007143360.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.22e-74TCP family protein