PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g18690.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 678aa    MW: 74794.4 Da    PI: 9.0611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g18690.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-057799223
                     EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                     kC++C++ F ++ n++rHir+ H
  Vradi08g18690.1 77 KCNKCSREFCSPINYRRHIRVqH 99
                     7*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.32876104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MPVAKLPASG TTGFTKTDDG NDSLDTIFRQ AIGKEPLLSF PRAGDSPVQW IQLLHALDQQ  60
ELPGWPLLSP VKVQLQKCNK CSREFCSPIN YRRHIRVQHR LKKLDKDSKK NRELLGAYWD  120
KLSIEEAKEV VSFKNVMLEE VPGSSILEAL TTLRKQGFSS LPQYYLRAGS ALLNIVQSRP  180
SSFPISSQEL FSILDDSSEK TFLVGSAVSM QRYVFDGEAG KIGLEQKNLV ACTSFLLEQK  240
LFTRGLLSGF RNISRYKNRL KMDTKAEILE RKRQKKLRQK EHKTKEQIEN NTETKGNINS  300
AGEDVSPGEA SLGTRDFDAH NPDIFADHSP PPPHVTSHCL DANDVIEKDT LSGYDDCDTD  360
QYIERQTLPG HNRRGTMPAR WQGLPKSQWA RANGLNAGQN SQPTKLGVIQ KHRTSHDLRV  420
APIINGSKVW SRKPKAESND LVLKNKLLKE PDKVKNHEVL IGSVSVSLGN CCHSGGNFMA  480
PQRDCSAGNL SKLNTAQEKP GSNGRLTAKF WRPVSQHGTK DPFPLQNGGT EADAINGKID  540
ENSSGQSSLR LCSVEGNDDI DFGDNFSHNV AKVDTESLRL SSHAAESFLA QRWKEAISSD  600
HVKLVFTPDS EPPGGQSVQD CELAADAYLS SDADKCGVLA STENRFPATS GVARSKPKTK  660
PEKGMKIKYI PKQKAAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269276ERKRQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g18690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514562.10.0uncharacterized protein LOC106772577
TrEMBLA0A1S3V8N50.0A0A1S3V8N5_VIGRR; uncharacterized protein LOC106772577
STRINGXP_007143440.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-127C2H2-like zinc finger protein