PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g16560.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 243aa    MW: 27807.9 Da    PI: 4.4678
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g16560.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-101544130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     rg+W++eEd++l+++v+++G g W  I+r+
  Vradi08g16560.1 15 RGPWSAEEDQILINYVHLHGEGKWGQISRR 44
                     89*************************996 PP
2Myb_DNA-binding51.32.6e-164994148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ + +E++l+++++ +lG++ W++Ia +++ gRt++++k++w++yl
  Vradi08g16560.1 49 RGNISSDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 94
                     78999*****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-101044IPR009057Homeodomain-like
SuperFamilySSF466891.35E-201490IPR009057Homeodomain-like
SMARTSM007173.11446IPR001005SANT/Myb domain
PfamPF002491.6E-81544IPR001005SANT/Myb domain
CDDcd001671.90E-111794No hitNo description
PROSITE profilePS5129424.3474498IPR017930Myb domain
SMARTSM007171.7E-154896IPR001005SANT/Myb domain
PfamPF002498.1E-154994IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-215095IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MKRKGAYENQ EAVNRGPWSA EEDQILINYV HLHGEGKWGQ ISRRTDIKRG NISSDEEDLI  60
IRLHSLLGNR WSLIAGRLPG RTDNEIKNYW NTYLRKKVEE KHNDNNNNIP VELRMESPNA  120
FGIAIDPAKS SEAVMCTEVM MATEAVNDSV NAKSLISTNY NENPFASVPA DHPEGLGRQF  180
DLTELLMPQE DCDFNGYACV EIPPHFGEHS CRVNDAMCET WYDDWKNEDY FPLDYDMDFP  240
LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-18139825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g16560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513204.11e-178transcription factor MYB23
TrEMBLA0A1S3V4X51e-177A0A1S3V4X5_VIGRR; transcription factor MYB23
STRINGXP_007143770.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15511512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-37MYB family protein