PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g15900.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 317aa    MW: 34573.4 Da    PI: 6.9443
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g15900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.5e-343993155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl+h+kSHLQkYRl
  Vradi08g15900.1 39 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRL 93
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-323694IPR009057Homeodomain-like
PROSITE profilePS5129410.7263696IPR017930Myb domain
SuperFamilySSF466891.11E-163995IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-243994IPR006447Myb domain, plants
PfamPF002498.2E-84192IPR001005SANT/Myb domain
PfamPF143794.7E-13167212IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MFSRLIHPHE GGVGQEDMQG ASNHAHLGDP CLVLTSDPKP RLRWTADLHE RFVDAVTQLG  60
GASKATPKAI MRTMNVKGLT LYHLKSHLQK YRLGKQSGKD SDEGCKDGSK SYSSNNVYII  120
SFCIGLNLLS FIEKPMQGMS GSYLQESPGT DNSSPKLPTS DANEGHEVKE ALRAQMEVQS  180
KLHLLVEAEK HLQIRQDAER RYMGMLERAC KMLADQFIGD IIMDTDGQKF QGLESKTPRS  240
SLVDHVGFFP PVCSEVGGMH VSEVPPILQP QGADCSTESC LTSLESLGGL TLEGSPGGSK  300
KRMLSLDSMT IAKGWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-193995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-193995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-193995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-193995157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g15900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511135.10.0protein PHR1-LIKE 2 isoform X3
RefseqXP_017437288.10.0PREDICTED: protein PHR1-LIKE 2-like isoform X1
TrEMBLA0A1S3UYJ40.0A0A1S3UYJ4_VIGRR; protein PHR1-LIKE 2 isoform X3
STRINGXP_007144235.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66183349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.14e-62G2-like family protein