PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g13900.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 677aa    MW: 77028.8 Da    PI: 6.8527
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g13900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.86.6e-11207229123
                      ---SS-EEEEEEE--TT-SS-EE CS
             WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                      +dDgy+WrKYGqK++kg+ fpr 
  Vradi08g13900.1 207 VDDGYRWRKYGQKTIKGNLFPRT 229
                      59*******************95 PP
2WRKY93.91.1e-29479537159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +dDgy+WrKYGqK++kg+ fpr+YY+Ct+ gC+vkk+ver+++++k ++ tYeg+Hnhe
  Vradi08g13900.1 479 VDDGYHWRKYGQKPIKGNLFPRAYYKCTTVGCSVKKHVERDSRNQKNLISTYEGRHNHE 537
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-9201229IPR003657WRKY domain
PROSITE profilePS5081111.864202229IPR003657WRKY domain
SuperFamilySSF1182902.48E-8204229IPR003657WRKY domain
SMARTSM007744.3E-4207241IPR003657WRKY domain
PfamPF031061.7E-7208229IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-28470540IPR003657WRKY domain
PROSITE profilePS5081130.377474539IPR003657WRKY domain
SuperFamilySSF1182906.54E-25477539IPR003657WRKY domain
SMARTSM007743.0E-33479538IPR003657WRKY domain
PfamPF031063.4E-23480537IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MSSFVENNSH QLHHTNQIFH GLSSKPNQQK RVFDFDLNEP QIDAMASPPL MDNNFVPISQ  60
VSADNVHVAT EGCQTLATTS DLLPPMQVIE QVHSSNSNHD ITVKFPFDLN AEFDEEDSIS  120
RTEEARHKVV ETIPTLPCTH SELTPQDVPP TDMDNEDRAS VVEGGTATSE TRKRKKSTEE  180
EYVKVQARSF RGKTLTVNVE SRRRTIVDDG YRWRKYGQKT IKGNLFPRTN TMPYRFYGLD  240
LNRFAAPQTE FPMPPPFNIP SSSQVFSIGS SSVFPLRGAI YRRLYWFYDL NQTMVSIFTM  300
SSSIENKHQH INETTATNSA ERSFHGFSAK EKMNLDFDLN EPMININLVP ISQKAVEEVH  360
SSNSNDVKMV EFPFDLNAKF DEDDQISCSK EVGGWSETIQ PLPSSYLEVT PQHLLPTDND  420
NEDRSSVVGG ASNTSQNRFC SSKHRKRKRS IEECEKGRGK GFRREDVEVK IKRQIQNTVD  480
DGYHWRKYGQ KPIKGNLFPR AYYKCTTVGC SVKKHVERDS RNQKNLISTY EGRHNHEQPN  540
PSKQYIHDEE GEQLAAVSAA NALLTFGSPG TRNFFNTPIA EPPVHTLQLL PNHTNPEFFN  600
MFIRSNPFGS FNYNMNFGSS YTPPMHYSSF FNNVITMPYG LNLARYVPPP FNIPFSFQAF  660
SQDWMSANGS SSVFRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-234775391577Probable WRKY transcription factor 4
2lex_A2e-234775391577Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171175RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g13900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410911.10.0PREDICTED: probable WRKY transcription factor 71, partial
TrEMBLA0A4D6N4V50.0A0A4D6N4V5_VIGUN; WRKY transcription factor 33
STRINGXP_007143973.11e-147(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1873256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.12e-23WRKY DNA-binding protein 4