PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g12470.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 398aa    MW: 43320.7 Da    PI: 9.3798
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g12470.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-0591113123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C++C+k F r  nL+ H r H
  Vradi08g12470.1  91 FICEICNKGFQRDQNLQLHRRGH 113
                      89*******************88 PP
2zf-C2H211.60.00085167189123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H + +
  Vradi08g12470.1 167 WKCDKCSKKYAVQSDWKAHSKIC 189
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-590113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.26E-790113No hitNo description
PROSITE profilePS5015710.84591113IPR007087Zinc finger, C2H2
SMARTSM003550.02291113IPR015880Zinc finger, C2H2-like
PfamPF121714.5E-591113IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM00355220132162IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-4155188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.26E-7162187No hitNo description
SMARTSM00355150167187IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSNITSCDSG SFSTENTRED AAVKQQPEIL AQFHSPHSLT STTTTNNSNA SNTNSQPPAP  60
VKKKRSLPGN PDPSAEVIAL SPNTLMATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK  120
QRTSTEVRKR VYVCPEPSCV HHNPARALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS  180
DWKAHSKICG TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKGNEGQL PKIGTNLQCQ  240
QIPNLVSSLP INTNVVPNPQ QIGGTSEFNH AEHKHPLSLP HELMPMPAPK PFNSNTTMAG  300
TVFSRSLSST SSPSLQLSSN IFEENGLHLA AGSQHIISAQ YNGFGGNGMS GGSVGMNGVD  360
MFNAILDQSK ALSKIIEQSN RSSSGGATNG GLEKLVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34163221361Zinc finger protein JACKDAW
5b3h_F3e-34163221361Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g12470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144938.10.0hypothetical protein PHAVU_007G196100g
SwissprotQ9SCQ61e-112IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLV7BGH70.0V7BGH7_PHAVU; Uncharacterized protein
STRINGXP_007144938.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-102C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]