PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g11610.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 92aa    MW: 10670 Da    PI: 8.9974
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g11610.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-085275326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                      +lC +f+ tG+C+yG +Ck+ H+
  Vradi08g11610.1 52 PPLCFHFLNTGFCRYGHSCKYLHP 75
                     689********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.04E-14449No hitNo description
PfamPF062202.3E-10539IPR013085Zinc finger, U1-C type
SuperFamilySSF902292.35E-74877IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9394977IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-44976IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-65275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-75474IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MPARKYYCDY CDKQFQDTPA DRKRHVNGIQ HLQAKARWYD SFNQHHQQIP NPPLCFHFLN  60
TGFCRYGHSC KYLHPTPSNT TQHAPIPSPG N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g11610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-95AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512981.12e-63zinc finger CCCH domain-containing protein 3
SwissprotQ0JP111e-22C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A1S3V3Q34e-62A0A1S3V3Q3_VIGRR; zinc finger CCCH domain-containing protein 3
STRINGXP_007145029.12e-58(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.16e-22C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]