PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g11380.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 305aa    MW: 34564.1 Da    PI: 4.8336
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g11380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.46.9e-102462792255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Vradi08g11380.1 246 WPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRH 279
                      59*****************************885 PP
2ELK37.26.1e-13199220122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++LlrKY+gyL+sL++EF+
  Vradi08g11380.1 199 ELKEMLLRKYGGYLSSLRKEFL 220
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.1E-2056100IPR005540KNOX1
PfamPF037902.6E-205899IPR005540KNOX1
SMARTSM012561.6E-25103154IPR005541KNOX2
PfamPF037911.8E-23106153IPR005541KNOX2
SMARTSM011885.0E-7199220IPR005539ELK domain
PROSITE profilePS5121311.366199219IPR005539ELK domain
PfamPF037894.6E-10199220IPR005539ELK domain
PROSITE profilePS5007112.843219282IPR001356Homeobox domain
SMARTSM003891.8E-13221286IPR001356Homeobox domain
SuperFamilySSF466899.41E-21221294IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28224284IPR009057Homeodomain-like
CDDcd000861.62E-12231283No hitNo description
PfamPF059202.2E-17239278IPR008422Homeobox KN domain
PROSITE patternPS000270257280IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MENFYKLNSL LSCAEDVVRG VNVSVSAAAA SELNLGLVAN NFLQLEEPET SDMSERFIKT  60
QIATHPLYPN LVSAYIECRK VGAPPELASL LEEIARESHP THALREIGDD PELDEFMESY  120
CEVLHRYKQE LSKPFDEATL FLCSIESQLS NLCKGTLALP LDNNPSDEAA GTSEDELSWE  180
KMEAVEGVES SGSRPGDQEL KEMLLRKYGG YLSSLRKEFL KKRKKGKLPK EARRILLDWW  240
STHYRWPYPT EEEKVQLSEM TGLDQKQINN WFINQRKRHW KPSEDMRFAI MDGVSGSAIG  300
RGPM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214223LRKEFLKKRK
2220224KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g11380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0940971e-170BT094097.1 Soybean clone JCVI-FLGm-18M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022640800.10.0homeobox protein knotted-1-like 10
SwissprotQ9FP291e-95KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A3Q0F9Q70.0A0A3Q0F9Q7_VIGRR; homeobox protein knotted-1-like 10
STRINGXP_007145002.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.15e-81KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]