PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g11340.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 351aa    MW: 39910.9 Da    PI: 9.6978
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g11340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l d++ ++G gtW+t +++ g++R +k+c++rw +yl
  Vradi08g11340.1 14 KGPWTPEEDGKLMDYISKHGRGTWRTLPKHAGLNRNGKSCRLRWENYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.31.3e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++  lG++ W++Ia  ++ gRt++++k++w++
  Vradi08g11340.1  67 RGKLTEEEEQLIINLHSVLGNK-WSKIATSLP-GRTDNEIKNYWNT 110
                      7999******************.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.2961IPR017930Myb domain
SuperFamilySSF466892.47E-3011108IPR009057Homeodomain-like
SMARTSM007171.1E-121363IPR001005SANT/Myb domain
PfamPF002492.2E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-241568IPR009057Homeodomain-like
CDDcd001671.13E-91661No hitNo description
PROSITE profilePS5129427.34362116IPR017930Myb domain
SMARTSM007175.1E-1566114IPR001005SANT/Myb domain
PfamPF002495.2E-1567110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2469116IPR009057Homeodomain-like
CDDcd001671.95E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRSPSSNES NVKKGPWTPE EDGKLMDYIS KHGRGTWRTL PKHAGLNRNG KSCRLRWENY  60
LRPDIKRGKL TEEEEQLIIN LHSVLGNKWS KIATSLPGRT DNEIKNYWNT TIRKKLLHMG  120
IDPETHRPRT DLNYLMNLSQ LLGMSNLGTS MSPWTNPTSL QTDVTQLAKL QVLQNMLQLM  180
NNTSLISMTN PYLLDNQILN PPSLDTFLHG TNTLQVRDPM LRGPEYPNPI GNNISDPFSQ  240
TPSDYSQQNI FKSGIEKENE TSHQEVRSYT KNINTSQQNQ AENLLPPLVA SCPRTTTFNK  300
MQRNYNEAQK STESPFSTFE AWEKFLIEDD EASVVATKGG RNGRRRPIKP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-31141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g11340.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513208.10.0transcription factor MYB41-like
SwissprotQ9S9Z26e-76MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A1S3V4C80.0A0A1S3V4C8_VIGRR; transcription factor MYB41-like
STRINGXP_007156413.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-78myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]