PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g11220.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 320aa    MW: 35916.7 Da    PI: 7.5924
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g11220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like36.51e-116184225
          G2-like  2 prlrWtpeLHerFveaveqLGGse 25
                     prlrWtp+LH rFv+av++LGG+e
  Vradi08g11220.1 61 PRLRWTPDLHLRFVHAVQRLGGQE 84
                     8*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-1457101IPR009057Homeodomain-like
SuperFamilySSF466892.87E-760101IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-1061102IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGESRVSQCS KTSPSNIDEE ECESHANEDQ RKQNNNGGSS SNSTVEESEK KIRPYVRSKL  60
PRLRWTPDLH LRFVHAVQRL GGQESLSIAH VKSHLQMFRS KKVDDRNQVF SDHTSLVEIG  120
DKNIYNLSQL SMLQGYNPSQ SSSYSYTNNN YPSYGFGDAS FGSYEKLVHR PLDWFNGMSR  180
AGSSICGEQS TSKTREPKYE LFSFGAYENL STRLSHVEHT PSNIIQQRAQ NLMPVNPTTE  240
LKRLKRKAQD SSLDLDLSLK LNTKMDGEGT KLEDNEVDSN LSLSLCSQSS SSNLSSRLKE  300
AKDRCEENGK RASTLDLTI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g11220.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512943.10.0two-component response regulator ARR18
TrEMBLA0A1S3V3L90.0A0A1S3V3L9_VIGRR; two-component response regulator ARR18
STRINGXP_007134813.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.16e-37G2-like family protein