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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vradi08g09990.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
CO-like |
Protein Properties |
Length: 314aa MW: 35653 Da PI: 7.5455 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vradi08g09990.1 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 18.2 | 5.1e-06 | 8 | 49 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
++r+C+ +++ + l+C+ ++ lC C + H H
Vradi08g09990.1 8 KQRTCDYCGDFTALLYCRADSAKLCFFCDRKLH-FpnqlfskH 49
789*******99*****************9999.334455555 PP
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2 | CCT | 65.5 | 1.6e-22 | 267 | 310 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R+ allRY+eK+ktR+++K+irYesRK+ AesR R+KGrFvk +
Vradi08g09990.1 267 RDSALLRYREKKKTRRYDKHIRYESRKVHAESRMRIKGRFVKDE 310
899**************************************975 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MNASPNQKQR TCDYCGDFTA LLYCRADSAK LCFFCDRKLH FPNQLFSKHS RTQLCDECGD 60 SPASVLCYAE NSVFCHHCDC ENHNNHLLSQ QHQRRPLQGF SGCPSVIHML MIFGLTEKSL 120 LSTEVGSSHH HGLSNLHVWN APSVFGLEDF IASSSSYKNR KGACGRQKEE ILSQLGELIK 180 LEPDLIHGEV DAAEPQKQFG NLSTGFERDI ETNMFPSYEA GVFRWHGESS DRANQIVPSD 240 NSVSDYSELV SAKDPSFTIP VATTHERDSA LLRYREKKKT RRYDKHIRYE SRKVHAESRM 300 RIKGRFVKDE TQK*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G47890.1 | 3e-62 | B-box type zinc finger protein with CCT domain |