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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g08840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 245aa MW: 27128.9 Da PI: 10.4091 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100 | 1.4e-31 | 178 | 236 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+k Vradi08g08840.1 178 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHPK 236 99***********************9988****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.4E-17 | 129 | 174 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 9.9E-34 | 164 | 236 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.998 | 171 | 237 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-27 | 174 | 236 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-38 | 176 | 236 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-27 | 178 | 235 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MVQHRNLVVE TGDAVVKFKK VVSLLQSGLG HARVRKVKNP QVPFTHQSIF LDNPNCKTNN 60 HHSKNLQLFQ PSFPDNSIVE LGSTIKHSLS LGQPSLELSS NGSVANLDGS AFHLIGAPHS 120 SDQNSQQHKR KCSARGDEGS LKCGSSSRCH CSKKRKHRMK RSIKVPAISN KLADIPPDDY 180 SWRKYGQKPI KGSPHPRGYY KCSSMRGCPA RKHVERCLEE PTMLIVTYEG EHNHPKLPTQ 240 STNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 169 | 238 | 7 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00284 | DAP | Transfer from AT2G30590 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g08840.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031237 | 1e-174 | KT031237.1 Glycine max clone HN_CCL_17 WRKY transcription factor (Glyma10g03820.2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014629302.1 | 1e-113 | LOW QUALITY PROTEIN: probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-79 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A151S345 | 1e-149 | A0A151S345_CAJCA; Putative WRKY transcription factor 39 | ||||
STRING | GLYMA03G31630.1 | 1e-108 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28650.1 | 4e-64 | WRKY DNA-binding protein 74 |