PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g08680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 186aa MW: 20938.7 Da PI: 6.2449 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.8 | 2.3e-35 | 1 | 93 | 8 | 99 |
DUF260 8 lrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 lrrkCa+dC++apyf++eq +++fa +hk+FGasnv+kll ++p+++r +am +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l+++k+ Vradi08g08680.1 1 LRRKCAADCIFAPYFCSEQgAARFATIHKVFGASNVSKLLMRIPDNDRFEAMVTIAYEAQARIRDPVYGCVSHIFALQQQVASLQAQLVQMKA 93 69*****************89******************************************************************998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.175 | 1 | 95 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.8E-34 | 1 | 92 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
LRRKCAADCI FAPYFCSEQG AARFATIHKV FGASNVSKLL MRIPDNDRFE AMVTIAYEAQ 60 ARIRDPVYGC VSHIFALQQQ VASLQAQLVQ MKALLDQNQM VYRNMENHWS ENVGQALNPF 120 RPTSMNNPIS PQSSLDSIDY SSNINDGMSL QDAQNGDDFC SWKRSYSNDL GELQELALRI 180 MRKCD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-29 | 1 | 88 | 18 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-29 | 1 | 88 | 18 | 104 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00309 | DAP | Transfer from AT2G42430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g08680.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-132 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014511698.1 | 1e-138 | LOB domain-containing protein 16 | ||||
Swissprot | Q9SLB7 | 8e-61 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A1S3V025 | 1e-137 | A0A1S3V025_VIGRR; LOB domain-containing protein 16 | ||||
STRING | XP_007144925.1 | 1e-121 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4509 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 5e-53 | lateral organ boundaries-domain 16 |