PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g08580.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 381aa    MW: 42144.6 Da    PI: 6.1236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g08580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.7e-16303349455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Vradi08g08580.1 303 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 349
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.7E-21296359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-20297360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-15302353No hitNo description
PfamPF000107.6E-14303349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-18305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MLELNRSKMN HCVPDFEIQM DDDEEFPIPV SKKPSMQNDE IMELLWQNGQ VVMQSQNHRS  60
LRKPPHTLVA GGVSPAREIR SSEAENYGNQ HLFMQEDEMA SWLHYPIHED PPPFDHHDFS  120
ADMLNPPTNV IASVTHNSAA IQSSVRTTEL RHPAPRPPIP PSRRPVPAAN RMQNFSHFSN  180
HGNASSSSKA TAAQPTVVDS CETPVATAEH ADTGRASMTA ADAGKAAESG GRETATCDVT  240
VTSSPGGSSG SAEPVQRELD RKRKGREAEE SEFQSEDVDF ESPEAKKQGR GSTSTKRSRA  300
AEVHNLSERR RRDRINEKMK ALQELIPRCN KSDKASMLDE AIEYLKSLQL QVQAMNQPNV  360
SKPTTSRGQE NPEKHQSEET *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307312ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g08580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514593.10.0transcription factor PIF1 isoform X1
RefseqXP_014514594.10.0transcription factor PIF1 isoform X1
TrEMBLA0A1S3V8B40.0A0A1S3V8B4_VIGRR; transcription factor PIF1 isoform X1
STRINGXP_007144439.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-60phytochrome interacting factor 3-like 5