PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g05830.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 251aa    MW: 27808.1 Da    PI: 7.384
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g05830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.2e-19180214135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Vradi08g05830.1 180 CQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRL 214
                      *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.833174210IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-16174224IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-15176237No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14178212IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.22E-14179227No hitNo description
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
PfamPF003203.9E-17180214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
METIGSVDDL LDFSLDIGEE DDDENKHRKS CPSLNSKCGN PSLFNSLVPD DPNHSYSEFV  60
EEELEWLSNK DAFPSVETFV DLSCIQPDTA KIKKSTPVTT PVLEDSTGSS NSNNSSNSIS  120
LLNSCDHLKV PVRARSKRRS RCRPGIADEN SGQQVWWRQP SNEISKAEEG MKISPIGRKC  180
QHCGAEKTPQ WRAGPLGPKT LCNACGVRFK SGRLVPEYRP ASSPSFRSDL HSNSHRKIVE  240
MRRQKQMGMG *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g05830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022640410.10.0GATA transcription factor 1
RefseqXP_022640411.10.0GATA transcription factor 1
RefseqXP_022640412.10.0GATA transcription factor 1
SwissprotQ8LAU94e-49GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A3Q0F9X60.0A0A3Q0F9X6_VIGRR; GATA transcription factor 1
STRINGXP_007145298.11e-154(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-42GATA transcription factor 1