PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g02530.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28112.7 Da    PI: 7.4528
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g02530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.5e-29959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+ien   rqvtfskRrng++KKA ELSvLCdaevaviifsstgklye+s+
  Vradi08g02530.1  9 KKIENLNSRQVTFSKRRNGLIKKARELSVLCDAEVAVIIFSSTGKLYEFSN 59
                     68***********************************************95 PP
2K-box56.98.9e-208717512100
            K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      ++   ++ + + L +ei +L++   +++G++L+ LslkeLq+Le+qL +++  ++++K+++l+eq+ +++ +e+++  en+  rk+lee
  Vradi08g02530.1  87 KDVTVMEPDTNLLMDEITKLRSAYSNMKGKELDGLSLKELQHLEKQLSEGILAVKDRKEQVLVEQLTRSRIQEQKAMLENEVXRKQLEE 175
                      556667888899************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.842161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-33277IPR002100Transcription factor, MADS-box
CDDcd002651.20E-43276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.32789179IPR002487Transcription factor, K-box
PfamPF014862.0E-1293173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGKIEIKK IENLNSRQVT FSKRRNGLIK KARELSVLCD AEVAVIIFSS TGKLYEFSNT  60
SMEHTLSRYM KGTELDSAEQ PIDVAPKDVT VMEPDTNLLM DEITKLRSAY SNMKGKELDG  120
LSLKELQHLE KQLSEGILAV KDRKEQVLVE QLTRSRIQEQ KAMLENEVXR KQLEEIQNKT  180
KTQFLEFSCL DRTFSKNSSK SLFNCASEEN GHSDTSLQLG LSTPDYGHQR KGWKIEPCND  240
SGSQVASQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-21174174MEF2C
5f28_B8e-21174174MEF2C
5f28_C8e-21174174MEF2C
5f28_D8e-21174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g02530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-91AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022641036.10.0agamous-like MADS-box protein AGL18 isoform X2
SwissprotQ9M2K83e-67AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A3Q0FBN80.0A0A3Q0FBN8_VIGRR; agamous-like MADS-box protein AGL18 isoform X2
STRINGXP_007145592.11e-159(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-69AGAMOUS-like 18