PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g01970.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 426aa    MW: 47103 Da    PI: 6.8406
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g01970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61e-31237291155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWt+eLHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Vradi08g01970.1 237 KTRIRWTQELHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRI 291
                      68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.404234294IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-28235292IPR009057Homeodomain-like
SuperFamilySSF466892.33E-17235291IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-23237292IPR006447Myb domain, plants
PfamPF002496.7E-9241290IPR001005SANT/Myb domain
PfamPF143791.6E-20336382IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MNEYKIDCVG RIQQSYGLNG DLSSEFGNCS SQCFDMASGG FEEESHIGQT KSSSSIISRF  60
ESPASAFYAT EICMGFPQYD RLVGNPSLIS QFSKINDVEF PLYQSPRQNL FLASLANQPA  120
PNFELSNPLQ AMLLSHVNSD QCVRSPEKSN KIPSGNFPGS SFLPIEQPKL FIDDAASPSV  180
PCIGNQDQRD CCGSYNLPAA QISFSSQQEM LSPTLSAGSL LTSSGNSSSN GPVVSSKTRI  240
RWTQELHEKF VECVNRLGGA EKATPKAILR LMESDGLTIF HVKSHLQKYR IAKYMPQSTQ  300
GKSEKRTNVE NVHLDAKTCC DSNQLSFLLF IASGLQIREA LQLQLDVQRR LHEQLEIQRK  360
LQLRIEEQGK QLKMMFDQQQ KTSDSNLSTL NLGNTTNNDR PISSKDVQVS VSEGSKRLFI  420
PSNIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-24237294158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-24237294158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-24237294158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-24237294158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g01970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512775.10.0myb family transcription factor PHL5 isoform X1
TrEMBLA0A1S3V3A00.0A0A1S3V3A0_VIGRR; myb family transcription factor PHL5 isoform X1
STRINGXP_007145673.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-65G2-like family protein