PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 159aa MW: 17393.9 Da PI: 10.665

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g30990.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.5	2.2e-20	24	73	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae Aa a+++a+++++g Vradi07g30990.1 24 QYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFPTAEAAALAYDEAALRFKG 73 7******.******94....45*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.6E-33	23	82	IPR001471	AP2/ERF domain
CDD	cd00018	8.36E-21	23	82	No hit	No description
SMART	SM00380	4.9E-38	24	87	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.07E-22	24	82	IPR016177	DNA-binding domain
PROSITE profile	PS51032	25.132	24	81	IPR001471	AP2/ERF domain
Pfam	PF00847	4.0E-14	24	73	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-11	25	36	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-11	47	63	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MLARCLLKFM TCNVAMCEGS ARKQYRGVRQ RPWGKWAAEI RDPKKAARVW LGTFPTAEAA 60 ALAYDEAALR FKGSKAKLNF PEKVHLSGEL GYLTNRPPSL QATSTPFQLL PRHTATDNDA 120 ILSSSSSPSS STFSMNSAAS SSEPPTKRKP DFDAKQKR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-27	23	89	4	70	ATERF1
3gcc_A	4e-27	23	89	4	70	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269\|PubMed:23616605}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g30990.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269\|PubMed:23616605}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014506869.1	3e-98	ethylene-responsive transcription factor ERF114-like
Swissprot	Q9FH54	2e-39	EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBL	A0A1S3ULN8	8e-97	A0A1S3ULN8_VIGRR; ethylene-responsive transcription factor ERF114-like
STRING	XP_007159952.1	5e-71	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF985	34	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61890.1	4e-31	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]