PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g29640.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 362aa    MW: 41060.7 Da    PI: 5.4028
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g29640.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-29133193259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK++ g+++prsYYrCt++   gC+++k+v+rs+edp++++itY+g+H+++
  Vradi07g29640.1 133 EDGYNWRKYGQKDILGAKYPRSYYRCTFRntqGCWATKQVQRSDEDPTIFDITYRGKHTCS 193
                      7**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.848127190IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-28129194IPR003657WRKY domain
SuperFamilySSF1182901.23E-25131194IPR003657WRKY domain
SMARTSM007741.8E-40132194IPR003657WRKY domain
PfamPF031068.3E-27133192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MASEWSWEQN TLINELIQGM ELARKLKEDL RLPYSVDSKD MLLQRILSSY EKALLILRCN  60
ASTSELQATS QATAALLPES PISVHGSPLS EDLDGVIKDH QEIQHDSKKR KITPKWMDHV  120
RVSCESGLEG PQEDGYNWRK YGQKDILGAK YPRSYYRCTF RNTQGCWATK QVQRSDEDPT  180
IFDITYRGKH TCSQGNNAVL PPKSPDKQEK THRHNVDIHH AQASQESLTK FRNILSVNTD  240
KLDNGDMAYP FTFPSTSFGC MKQYSHSLIP GTLENEYFLS DQYQTHLLSP TTPESNYLPS  300
PTFQMNEFDG ILNKPYSDSD INEIISTNTS ATNSPIPDFN FSLDPVEIDP NFPFNNPGFF  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-181341901874Disease resistance protein RRS1
5w3x_D4e-181341901874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g29640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312350.0KT031235.1 Glycine max clone HN_CCL_109 WRKY transcription factor (Glyma08g02580.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014509525.10.0probable WRKY transcription factor 41
TrEMBLA0A1S3UU220.0A0A1S3UU22_VIGRR; probable WRKY transcription factor 41
STRINGXP_007160152.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-69WRKY family protein