 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Vradi07g28610.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 331aa MW: 37377.5 Da PI: 8.2 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi07g28610.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 63.3 | 2.7e-20 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
+++ n+qvtfskRr g++KKA+ELSvLC++e a+++fs+
Vradi07g28610.1 11 VKDPNNKQVTFSKRRSGLFKKAFELSVLCGVELAIVMFSPGK 52
56788**********************************965 PP
|
| 2 | SRF-TF | 66.5 | 2.7e-21 | 163 | 207 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
+ +qvtfskRr+g++KKA+ELS+LC+aeva+++fs+ +k y +
Vradi07g28610.1 163 DPNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSF 207
56679*********************************9998877 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF55455 | 6.02E-25 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 25.287 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 4.8E-29 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.6E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.7E-22 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.6E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.6E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 22.75 | 155 | 211 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.32E-24 | 155 | 225 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.3E-24 | 156 | 210 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.6E-24 | 162 | 207 | IPR002100 | Transcription factor, MADS-box |
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MGRRKIEIAE VKDPNNKQVT FSKRRSGLFK KAFELSVLCG VELAIVMFSP GKRPHSFGHP 60
SVNIVADKFL WKKPTSNVVR ANYVRENDAP NEVDVMDRLS QQLSGVEVHI NEEHEKATEL 120
DKREKEQEAS QAQNKELLNS PVLQRMVEDY VDAIEIEITE VKDPNTKQVT FSKRRTGLFK 180
KANELSILCG AEVAIVVFSP GNKPYSFGHP SVDVVADKFL QQESASDVVV KPNVVEGNSS 240
ANDDNIDALN QQLSGVQTLI SEEHKKAVEL DWRKKQQDVT KLTYSKQLQR SYLRVQRKVE 300
DYLDAIEVSE YMLLLAKEPV IGITAKRRKN *
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
