PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g28610.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 331aa    MW: 37377.5 Da    PI: 8.2
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g28610.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.32.7e-201152344
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     +++  n+qvtfskRr g++KKA+ELSvLC++e a+++fs+  
  Vradi07g28610.1 11 VKDPNNKQVTFSKRRSGLFKKAFELSVLCGVELAIVMFSPGK 52
                     56788**********************************965 PP
2SRF-TF66.52.7e-21163207549
                      SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF   5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                      +   +qvtfskRr+g++KKA+ELS+LC+aeva+++fs+ +k y +
  Vradi07g28610.1 163 DPNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSF 207
                      56679*********************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.02E-25175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.287161IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-29160IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-18323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-221157IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-183859IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.75155211IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-24155225IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-24156210IPR002100Transcription factor, MADS-box
PfamPF003192.6E-24162207IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRRKIEIAE VKDPNNKQVT FSKRRSGLFK KAFELSVLCG VELAIVMFSP GKRPHSFGHP  60
SVNIVADKFL WKKPTSNVVR ANYVRENDAP NEVDVMDRLS QQLSGVEVHI NEEHEKATEL  120
DKREKEQEAS QAQNKELLNS PVLQRMVEDY VDAIEIEITE VKDPNTKQVT FSKRRTGLFK  180
KANELSILCG AEVAIVVFSP GNKPYSFGHP SVDVVADKFL QQESASDVVV KPNVVEGNSS  240
ANDDNIDALN QQLSGVQTLI SEEHKKAVEL DWRKKQQDVT KLTYSKQLQR SYLRVQRKVE  300
DYLDAIEVSE YMLLLAKEPV IGITAKRRKN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-141252191MEF2C
5f28_B2e-141252191MEF2C
5f28_C2e-141252191MEF2C
5f28_D2e-141252191MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g28610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506832.11e-123agamous-like MADS-box protein AGL29
TrEMBLA0A1S3ULF41e-122A0A1S3ULF4_VIGRR; agamous-like MADS-box protein AGL29
STRINGXP_007160293.11e-106(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.13e-28AGAMOUS-like 91