PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g27760.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 315aa    MW: 36063.1 Da    PI: 6.6726
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g27760.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-171966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll +++  +G g+W++ a++ g++Rt+k+c++rw++yl
  Vradi07g27760.1 19 RGPWTLEEDNLLSQYISDHGEGRWNLLAKRSGLKRTGKSCRLRWLNYL 66
                     89********************************************97 PP
2Myb_DNA-binding52.61.1e-1672115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Vradi07g27760.1  72 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 115
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.8011466IPR017930Myb domain
SuperFamilySSF466893.84E-3017113IPR009057Homeodomain-like
SMARTSM007177.9E-161868IPR001005SANT/Myb domain
PfamPF002495.1E-161966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-232073IPR009057Homeodomain-like
CDDcd001671.52E-112166No hitNo description
PROSITE profilePS5129425.69767121IPR017930Myb domain
SMARTSM007173.5E-1571119IPR001005SANT/Myb domain
PfamPF002491.3E-1572115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2374120IPR009057Homeodomain-like
CDDcd001672.78E-1176115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSTSKSVSSS SEDDNELRRG PWTLEEDNLL SQYISDHGEG RWNLLAKRSG LKRTGKSCRL  60
RWLNYLKPDV KRGNLTPQEQ LLILELHSKW GNRWSKIAQH LPGRTDNEIK NYWRTRIQKQ  120
ARHLKIETDS REFQELVRRF WMPRLLQKVK ESLCSSAMSI ENQAIPLVHD DGVSQQSTVG  180
TIPWQGACVS MNGGSPTYMD QHEQNSDSEH NSGSCISFSE SANIPKVSHH FGNTMDQFNS  240
LSNNDFGTYS YDPYHVNDNA YEMETFKTAT AKVAQDVQYP IADCQTAGTD WPSNDFACTM  300
WNIDELWQFS KLQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25161214108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g27760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510156.10.0transcription factor MYB24
TrEMBLA0A1S3UVP40.0A0A1S3UVP4_VIGRR; transcription factor MYB24
STRINGXP_007160381.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.17e-80myb domain protein 62