PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TALE

Protein Properties

Length: 247aa MW: 27904.4 Da PI: 5.2222

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g26830.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.4	1.4e-09	175	209	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Vradi07g26830.1 175 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 209 569*****************************885 PP
2	ELK	38.9	1.9e-13	129	149	1	21
ELK 1 ELKhqLlrKYsgyLgsLkqEF 21 ELK qLlrKY+gyLgsLkqEF Vradi07g26830.1 129 ELKGQLLRKYRGYLGSLKQEF 149 9*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01256	1.5E-23	47	98	IPR005541	KNOX2
Pfam	PF03791	7.6E-21	51	97	IPR005541	KNOX2
SMART	SM01188	5.9E-7	129	150	IPR005539	ELK domain
Pfam	PF03789	3.4E-9	129	149	IPR005539	ELK domain
PROSITE profile	PS51213	11.139	129	149	IPR005539	ELK domain
PROSITE profile	PS50071	13.07	149	212	IPR001356	Homeobox domain
SMART	SM00389	7.4E-13	151	216	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-20	151	227	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-28	154	214	IPR009057	Homeodomain-like
CDD	cd00086	2.48E-12	161	213	No hit	No description
Pfam	PF05920	3.7E-17	169	208	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	187	210	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEGGSNEASS VMGFGENTSS SGVGAPPEVV ARLEEACASS AVTMAGGTAR IGEDPALDQF 60 MEAYCEMLIK YEQELSKPFK DAMLFLQRIE CQFKSLTISS SDTDGGRNGT SEEIDVENNI 120 IDPQAEEQEL KGQLLRKYRG YLGSLKQEFT KKRKKGKLPK EARQQLLDWW SRHYKWPYPS 180 ESQKLALAES TGLDQKQINN WFINQRKRHW KPSEDMQFVV VDPSHPHYYM ENVLANPFPD 240 LSHTML*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	153	LKQEFTKKRK
2	150	154	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g26830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857339	1e-152	DQ857339.1 Glycine max KNT1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022639873.1	1e-169	homeobox protein SBH1 isoform X1
Swissprot	P46608	1e-127	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	A0A3Q0F7M5	1e-168	A0A3Q0F7M5_VIGRR; homeobox protein SBH1 isoform X1
STRING	XP_007153990.1	1e-149	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2039	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-112	KNOX/ELK homeobox transcription factor

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]