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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g25560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 102aa MW: 11172.2 Da PI: 9.6086 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.9 | 1.1e-05 | 1 | 24 | 8 | 30 |
HHHHHHHHHHHHHHHHHCTSCC.C CS HLH 8 rErrRRdriNsafeeLrellPk.a 30 +Er RR+++ + f +L++ +P + Vradi07g25560.1 1 MERERRSKMTQMFTQLQTSVPGlL 24 6********************844 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.4E-5 | 1 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MERERRSKMT QMFTQLQTSV PGLLPQVHQS SSNIPCLVNF MVFGGFGLVT QILKVFCNHQ 60 AEILAANVTV NNGKLILAIT ALVQNNGNCV VEKIKREIMG L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g25560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 2e-88 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022639783.1 | 3e-41 | basic helix-loop-helix protein A-like | ||||
TrEMBL | A0A0S3R8Y3 | 9e-40 | A0A0S3R8Y3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A3Q0F7D8 | 8e-40 | A0A3Q0F7D8_VIGRR; basic helix-loop-helix protein A-like | ||||
STRING | XP_007154231.1 | 4e-38 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14330 | 13 | 14 |