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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Vradi07g24510.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family | WRKY | ||||||||
| Protein Properties | Length: 301aa MW: 34357.4 Da PI: 5.4484 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 56.1 | 7.2e-18 | 35 | 72 | 22 | 59 |
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
rsYYrCt+a C vkk+vers+edp+vv++tYeg+H+h+
Vradi07g24510.1 35 RSYYRCTTAACGVKKRVERSSEDPTVVVTTYEGQHTHP 72
9************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF118290 | 7.85E-15 | 24 | 74 | IPR003657 | WRKY domain |
| SMART | SM00774 | 6.6E-14 | 30 | 73 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 5.1E-13 | 34 | 72 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 18.406 | 35 | 74 | IPR003657 | WRKY domain |
| Gene3D | G3DSA:2.20.25.80 | 3.4E-15 | 35 | 74 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 301 aa Download sequence Send to blast |
MVRPKPKKKH QKKPREPRFA FKTKSEVDHL DDGYRSYYRC TTAACGVKKR VERSSEDPTV 60 VVTTYEGQHT HPCPATSRAS LGFLHSEPTT CVNDYVNTSS LSGFLQSQEN LRGFALSRVG 120 GPQDFFNGLL QDMVGGSDYY PVVGSDFWRK AVRYLWERDF MWERERQEWI LGFWGIKKSE 180 LIVDPDFPED IFFPPEQQSP VGIDLGELFP NPSPLDGCFG NESSNAQIPF LDTDDEDEFV 240 NSIWVDDEEL VINEERRHCF VNRSTQPKSL RRVYNASSGT YAEVVSNLFF LHSCKIGKPV 300 * |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wj2_A | 4e-15 | 20 | 75 | 7 | 78 | Probable WRKY transcription factor 4 |
| 2lex_A | 4e-15 | 20 | 75 | 7 | 78 | Probable WRKY transcription factor 4 |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Vradi07g24510.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP015042 | 1e-154 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. | |||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G49520.1 | 1e-26 | WRKY DNA-binding protein 48 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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