PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g21330.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 538aa    MW: 58069.3 Da    PI: 9.0715
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g21330.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.95.7e-25193249259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e++++ ++v+ei+Y++eH h+
  Vradi07g21330.1 193 SDGYNWRKYGQKQVKSPTGSRSYYRCTHSDCCAKK-IECCDHSGHVIEIVYKSEHSHD 249
                      7********************************98.*********************7 PP
2WRKY31.34e-10366384321
                      -SS-EEEEEEE--TT-SS- CS
             WRKY   3 DgynWrKYGqKevkgsefp 21 
                      Dgy+WrKYGqK+vkg+++p
  Vradi07g21330.1 366 DGYRWRKYGQKMVKGNPHP 384
                      9****************99 PP
3WRKY47.92.8e-154164561959
                      SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  19 efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +  r+YYrCtsagCpv+k++e + ++ ++v+itY+g H+h+
  Vradi07g21330.1 416 DGYRNYYRCTSAGCPVRKHIESAVDNSDAVIITYKGVHDHD 456
                      5569************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-21186251IPR003657WRKY domain
PROSITE profilePS5081118.119187251IPR003657WRKY domain
SuperFamilySSF1182903.14E-20190251IPR003657WRKY domain
SMARTSM007747.6E-24192250IPR003657WRKY domain
PfamPF031062.6E-17194249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-28349384IPR003657WRKY domain
PROSITE profilePS5081124.478359458IPR003657WRKY domain
SuperFamilySSF1182907.45E-8360385IPR003657WRKY domain
SMARTSM007741.1E-26364457IPR003657WRKY domain
PfamPF031061.7E-6366385IPR003657WRKY domain
SuperFamilySSF1182901.29E-12416458IPR003657WRKY domain
PfamPF031061.1E-9418455IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-28419458IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MAERRSPQAL PDPNLEPNDS DQKPQDANQT QRLTESPSAA EPQCGELRSS GERRTESNLE  60
TLGGAGTSSV QTLAVHHHRS DDLHGSSAAS NSSGKAESKE TDAPPEKEII QGEAQPLPTQ  120
TNRLQLSVCS TPLSELPPTS VIQSSPSVSS PSVPKQKLST PKVNNARLPE VDKKSSSGGK  180
TLSAVSVARS SASDGYNWRK YGQKQVKSPT GSRSYYRCTH SDCCAKKIEC CDHSGHVIEI  240
VYKSEHSHDP PRKINSLREN KILSASEPIV EKSVPDQPVR LLKGPDPSIS SKESLQEAPC  300
STDKKRPNSS SISNGKVILK EEPVNEPEPK KRMKKGDLTD MDSPVKPGKK PKFVIHAAGD  360
VGISGDGYRW RKYGQKMVKG NPHPSFSVRL RWAVNEMGVR AVVGCGIAMP PEPKSDGYRN  420
YYRCTSAGCP VRKHIESAVD NSDAVIITYK GVHDHDMPVP KKRHGPPSAP LVAAAAPASM  480
NSLQVKKPDS PHKKKVSTQW SVDTEGELTG EALELGGEKA MESARTLLSI GFEIKPC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g21330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014509855.10.0probable WRKY transcription factor 32
SwissprotP595831e-125WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A1S3UV050.0A0A1S3UV05_VIGRR; probable WRKY transcription factor 32
STRINGXP_007154886.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.13e-98WRKY DNA-binding protein 32