PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g21010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 327aa    MW: 37298.5 Da    PI: 6.0952
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g21010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.3e-072642962254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       +yp++e++++L +++gL+ +q+ +WF N+R +
  Vradi07g21010.1 264 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 296
                      69*****************************87 PP
2ELK29.32e-10217238122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++++++++E++
  Vradi07g21010.1 217 ELKHELKQGYKEKIVDIREEIL 238
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-1874118IPR005540KNOX1
PfamPF037902.0E-1776117IPR005540KNOX1
SMARTSM012566.2E-14111160IPR005541KNOX2
PfamPF037913.6E-11120159IPR005541KNOX2
PfamPF037897.1E-7217238IPR005539ELK domain
SMARTSM011886.1E-4217238IPR005539ELK domain
PROSITE profilePS512139.969217237IPR005539ELK domain
PROSITE profilePS5007111.564237300IPR001356Homeobox domain
SuperFamilySSF466898.13E-16239303IPR009057Homeodomain-like
SMARTSM003891.6E-10239304IPR001356Homeobox domain
CDDcd000861.55E-10240301No hitNo description
Gene3DG3DSA:1.10.10.609.5E-25244301IPR009057Homeodomain-like
PfamPF059203.5E-18257296IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAFQDHLHHE IAFQRFTEDQ DLSEGRDMQQ RLPPTWLNSV NAAQQRQQNF LDAAAEKSVD  60
RNRGESNCES EDLREYKADI LGHPLYDQLL SAHVSCLRIA TPVDQLPRID AQLQQSQRVT  120
HYVLLLCAFK EQLQQHVRVH AMEAVMACWD LEQSLQSLTG VSPGEGTGAT MSDDEDDQAE  180
SNGNLYEGSF DGGESLGFGP LVPTETERSL MERVRHELKH ELKQGYKEKI VDIREEILRK  240
RRAGKLPGDT TSLLKAWWQA HSKWPYPTEE DKARLVQETG LQLKQINNWF INQRKRNWHT  300
NNPSSSSNTK TKRKSSAGES SNQSFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g21010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-172AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014509993.10.0homeobox protein knotted-1-like LET12 isoform X1
SwissprotP480011e-149KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A1S3UV720.0A0A1S3UV72_VIGRR; homeobox protein knotted-1-like LET12 isoform X1
STRINGXP_007155117.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-142KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]