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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g19770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 274aa MW: 31314.7 Da PI: 9.9804 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.5 | 2.3e-30 | 42 | 91 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ Vradi07g19770.1 42 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 91 79***********************************************8 PP | |||||||
2 | K-box | 88.3 | 1.5e-29 | 109 | 220 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLq..............reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 +s+g s++ea+a+ +qqe+akL+ +i+nLq + ++++Ge L++++ k+L++Le++Lek++++iRskKnell+++ie++qk Vradi07g19770.1 109 SSNGGSASEANAQFYQQEAAKLRVQISNLQnhnrqvgyscikitIQEKQMMGEALSDMDAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQK 202 45566699**********************9998888888888767799********************************************* PP K-box 83 kekelqeenkaLrkklee 100 +e +l+++n+ Lr+k++e Vradi07g19770.1 203 RETDLHNNNQLLRAKMAE 220 ***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.8E-42 | 34 | 93 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.726 | 34 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.01E-44 | 35 | 111 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-32 | 35 | 107 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-32 | 36 | 56 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 36 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-26 | 43 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-32 | 56 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-32 | 71 | 92 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.714 | 120 | 224 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.3E-18 | 151 | 218 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MRTINKMMMF YLIQLPLMAF PNQSMSSVSP ERKMGRGKIE IKRIENTTSR QVTFCKRRNG 60 LLKKAYELSV LCDAEVALIV FSNRGRLYEY ANNSVKASIE RYKKASSDSS NGGSASEANA 120 QFYQQEAAKL RVQISNLQNH NRQVGYSCIK ITIQEKQMMG EALSDMDAKD LKNLETKLEK 180 GISRIRSKKN ELLFAEIEYM QKRETDLHNN NQLLRAKMAE RERSEHNVNV LSGSTSYESM 240 QSQFDSRGFF QVTGLQPNNN QYAGQDHMSL QFV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-19 | 34 | 106 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-19 | 34 | 106 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-19 | 34 | 106 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-19 | 34 | 106 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-19 | 34 | 106 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-19 | 34 | 106 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-19 | 34 | 106 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-19 | 34 | 106 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-19 | 34 | 106 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-19 | 34 | 106 | 1 | 73 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g19770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093434 | 1e-164 | BT093434.1 Soybean clone JCVI-FLGm-14I9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507803.2 | 0.0 | floral homeotic protein AGAMOUS-like isoform X1 | ||||
Swissprot | Q43585 | 1e-118 | AG_TOBAC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A1S3UP04 | 0.0 | A0A1S3UP04_VIGRR; floral homeotic protein AGAMOUS-like isoform X1 | ||||
STRING | XP_007159503.1 | 1e-160 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF684 | 29 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-103 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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