PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g19770.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 274aa    MW: 31314.7 Da    PI: 9.9804
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g19770.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.52.3e-304291150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Vradi07g19770.1 42 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 91
                     79***********************************************8 PP
2K-box88.31.5e-291092203100
            K-box   3 kssgksleeakaeslqqelakLkkeienLq..............reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                      +s+g s++ea+a+ +qqe+akL+ +i+nLq               + ++++Ge L++++ k+L++Le++Lek++++iRskKnell+++ie++qk
  Vradi07g19770.1 109 SSNGGSASEANAQFYQQEAAKLRVQISNLQnhnrqvgyscikitIQEKQMMGEALSDMDAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQK 202
                      45566699**********************9998888888888767799********************************************* PP

            K-box  83 kekelqeenkaLrkklee 100
                      +e +l+++n+ Lr+k++e
  Vradi07g19770.1 203 RETDLHNNNQLLRAKMAE 220
                      ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-423493IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.7263494IPR002100Transcription factor, MADS-box
CDDcd002657.01E-4435111No hitNo description
SuperFamilySSF554552.75E-3235107IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-323656IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003690IPR002100Transcription factor, MADS-box
PfamPF003192.5E-264390IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-325671IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-327192IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.714120224IPR002487Transcription factor, K-box
PfamPF014861.3E-18151218IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MRTINKMMMF YLIQLPLMAF PNQSMSSVSP ERKMGRGKIE IKRIENTTSR QVTFCKRRNG  60
LLKKAYELSV LCDAEVALIV FSNRGRLYEY ANNSVKASIE RYKKASSDSS NGGSASEANA  120
QFYQQEAAKL RVQISNLQNH NRQVGYSCIK ITIQEKQMMG EALSDMDAKD LKNLETKLEK  180
GISRIRSKKN ELLFAEIEYM QKRETDLHNN NQLLRAKMAE RERSEHNVNV LSGSTSYESM  240
QSQFDSRGFF QVTGLQPNNN QYAGQDHMSL QFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-1934106173Myocyte-specific enhancer factor 2B
1tqe_Q2e-1934106173Myocyte-specific enhancer factor 2B
1tqe_R2e-1934106173Myocyte-specific enhancer factor 2B
1tqe_S2e-1934106173Myocyte-specific enhancer factor 2B
6c9l_A2e-1934106173Myocyte-specific enhancer factor 2B
6c9l_B2e-1934106173Myocyte-specific enhancer factor 2B
6c9l_C2e-1934106173Myocyte-specific enhancer factor 2B
6c9l_D2e-1934106173Myocyte-specific enhancer factor 2B
6c9l_E2e-1934106173Myocyte-specific enhancer factor 2B
6c9l_F2e-1934106173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g19770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0934341e-164BT093434.1 Soybean clone JCVI-FLGm-14I9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507803.20.0floral homeotic protein AGAMOUS-like isoform X1
SwissprotQ435851e-118AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLA0A1S3UP040.0A0A1S3UP04_VIGRR; floral homeotic protein AGAMOUS-like isoform X1
STRINGXP_007159503.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-103MIKC_MADS family protein
Publications ? help Back to Top
  1. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]