PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g18990.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 353aa    MW: 39134.6 Da    PI: 6.0551
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g18990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.7e-20155205256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+t eeAa a+++a+ kl+ge
  Vradi07g18990.1 155 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTGEEAALAYDNAAFKLRGE 205
                      59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-31155213IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-23155213IPR016177DNA-binding domain
PROSITE profilePS5103222.919155212IPR001471AP2/ERF domain
SMARTSM003805.9E-38155218IPR001471AP2/ERF domain
PRINTSPR003671.2E-10156167IPR001471AP2/ERF domain
CDDcd000189.21E-34156214No hitNo description
PfamPF008479.1E-15156205IPR001471AP2/ERF domain
PRINTSPR003671.2E-10178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MRTPMCWNTE GDPYGVVLVH VRNNFSIGSS LRVGCRDPYS EELMKALEPF VKSDYFSVSS  60
DSASSSRQSH APSSSSSLSF SSPSSSYSLI SSTSYPSPNQ IKLNKLTPDQ ILQIQAQVGL  120
QQHMGYSTQR ENQPQLGPKR VPMKHGGAAA KAAKLYRGVR QRHWGKWVAE IRLPKNRTRL  180
WLGTFDTGEE AALAYDNAAF KLRGEFARLN FPHLRHQGAF VFGEFGDYKP LPSSVDSKLQ  240
AICESLAKQE QQKTSCSVED VKPEVHTAAE LAQVESDVAQ SNVCPEFDNF KVENGNENPM  300
LSSPVSGESS SPESGVTFLD FSDLAHSNYE WDEMESFRLE KYPSVEIDWA SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-21154212160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g18990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507063.10.0ethylene-responsive transcription factor ERF060
TrEMBLA0A1S3ULW80.0A0A1S3ULW8_VIGRR; ethylene-responsive transcription factor ERF060
STRINGXP_007159638.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-66ERF family protein