PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g17750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 251aa MW: 27139.9 Da PI: 6.4996 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.2 | 4.2e-39 | 3 | 62 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s+ Vradi07g17750.1 3 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSN 62 6899****************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-28 | 3 | 60 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-33 | 4 | 60 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.73 | 6 | 60 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 8 | 44 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MNHQALKCPR CDSLNTKFCY YNNYNLSQPR HFCKNCRRYW TKGGVLRNVP VGGGCRKSKR 60 SNKPAKTSDA VPPPPPPDPD HSSSESSSLT AAAAEPVSAP INSDSTNMQE SKLSVPVDPV 120 LETNPLEQGA GDCGGIFSEI GPFTSLIATS TNEPLGFGFG NGLPDASSFQ WQHSKVSSNQ 180 ELKLAESSFL DHTVDLSTLH GKTNHGTFGS LDWQGGADQG LFDLPNTVDH AYWSHTHWSD 240 HDNSSLFHLP * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g17750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506030.1 | 0.0 | dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A0A1S3UJ23 | 0.0 | A0A1S3UJ23_VIGRR; dof zinc finger protein DOF5.4-like | ||||
STRING | XP_007155202.1 | 1e-158 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5998 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 3e-38 | OBF binding protein 4 |