PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g17690.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 398aa    MW: 45291.4 Da    PI: 9.2347
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g17690.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.9e-31252151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  Vradi07g17690.1  2 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 52
                     79***********************************************96 PP
2K-box86.26.6e-298116516100
            K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      + +qe+ +Lk+++e Lqr+qR+llGedL +++  +L+qLe+qLe +lk+iRs+K++++l+q+ +l ++e  l e+n+ Lr+klee
  Vradi07g17690.1  81 QNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTTDLEQLENQLEVALKNIRSTKTQFMLDQLADLHHRETLLVETNNVLRSKLEE 165
                      4579******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-32153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.646154IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-30172IPR002100Transcription factor, MADS-box
CDDcd002651.11E-38171No hitNo description
PfamPF003194.7E-26350IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-191631IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-193152IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.35579169IPR002487Transcription factor, K-box
PfamPF014863.4E-2581163IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
LKRIENKINR QVTFAKRRNG LLKKAYELSV LCDAEVALII FSNRGKLYEF SSTSSMMKTL  60
EKYQKYSYSA LETTRPINDI QNYQEYLRLK ARVEVLQRSQ RNLLGEDLAQ MNTTDLEQLE  120
NQLEVALKNI RSTKTQFMLD QLADLHHRET LLVETNNVLR SKLEESNNSQ APVSLALEAG  180
GPNIHYTNFP PQSEGFFQPV GVNPNLQIGF NQIGGDDANL GASSLSMHGF ASGSEAIVEK  240
LREFLNGKGK SGVEKDRKQD QQASHLLKEK ICMERILERY ERHSYAEKQE GAGDQPPNEN  300
WAIEHEKLKA RVEVLQRHQR TKPCMNLFQS FRKRIRLFGN VTTCSPRSAQ QIKEKEKALE  360
SLSIGGSPEA RCNERTPTST QPKTIIPPWM MTLPTHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-237916317101Developmental protein SEPALLATA 3
4ox0_B2e-237916317101Developmental protein SEPALLATA 3
4ox0_C2e-237916317101Developmental protein SEPALLATA 3
4ox0_D2e-237916317101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g17690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932640.0BT093264.1 Soybean clone JCVI-FLGm-14C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506954.11e-169MADS-box protein EJ2-like
SwissprotQ7Y0407e-98EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A4D6KYL70.0A0A4D6KYL7_VIGUN; MADS-box transcription factor
STRINGXP_007155209.11e-161(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-81MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]