PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g17610.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 365aa    MW: 40186.7 Da    PI: 9.8774
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g17610.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.81.4e-28511593103
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                      g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl+  k  i++l+ +++++  +    ++   s+  s+ +       
  Vradi07g17610.1  51 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLEVTKSDIDKLPPLQFPHCFAQfH-QQTPLSGT-SQFSlgslydg 142
                      78*************************************************************6666533321.11111111.11112234444 PP

              TCP  89 ........kaaksaakskksqks 103
                                      +++  ++
  Vradi07g17610.1 143 vnssflkdG------GNQNLMTK 159
                      432222220......22222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.66652110IPR017887Transcription factor TCP subgroup
PfamPF036342.1E-2752175IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MMNESSSKVQ QGNQQEGENI KIEKLSKAAS TSRSWSAFRN PRIVRVSRSL GGKDRHSKVC  60
TIRGLRDRRI RLSVPTAIQL YDLQDKLGLN QPSKVVDWLL EVTKSDIDKL PPLQFPHCFA  120
QFHQQTPLSG TSQFSLGSLY DGVNSSFLKD GGNQNLMTKS TRYWDLDSQN RTELAESVST  180
SQKGKFWIKP NELENHQNGI VGTSTRNREE SSAHCKVFPL GTNSSYLPGL SNNAITHNSY  240
HHSEPSTLSL SHLGSHELFP SHPSTGSSVQ FSSSNFCGAS GPQLLFSPPS ATPSAFYSVE  300
SDPRQSNSIQ IFSSSSQVMM PHPLIQSIHS TTSPLRRLPT SLSSKLFDSD NTDRSQQGKG  360
STRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1857111155Putative transcription factor PCF6
5zkt_B5e-1857111155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g17610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507956.10.0transcription factor TCP5
RefseqXP_022639356.10.0transcription factor TCP5
TrEMBLA0A1S3UPG30.0A0A1S3UPG3_VIGRR; transcription factor TCP5
STRINGXP_007155224.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-52TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5