PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g16260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HSF | ||||||||
Protein Properties | Length: 176aa MW: 20803.8 Da PI: 7.8092 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.7 | 1e-34 | 8 | 102 | 2 | 102 |
HHHHHHHHHC...TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl k+y++le +e++++++sw+e+g+ fvv+ + ef+++ Lp+yFkh+nf+SF+RQLn+YgFkk+++++ weFkh++F++g ++ Vradi07g16260.1 8 FLLKTYDLLEegeSEDMTRIVSWNEEGSGFVVWSPAEFSEHTLPRYFKHNNFSSFIRQLNTYGFKKMSSKR---------WEFKHEKFQRGCRH 92 9********977778999**************************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 +l +i rkk Vradi07g16260.1 93 MLGEITRKKC 102 *******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 7.5E-42 | 4 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.0E-35 | 5 | 94 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.5E-28 | 5 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.1E-12 | 8 | 31 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-30 | 8 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-12 | 49 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 50 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-12 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MNRCPAPFLL KTYDLLEEGE SEDMTRIVSW NEEGSGFVVW SPAEFSEHTL PRYFKHNNFS 60 SFIRQLNTYG FKKMSSKRWE FKHEKFQRGC RHMLGEITRK KCEPSVFPAY LKSSSEENAT 120 EENNQQLLME ENKNLKKERL ELQMQIEECK ALEIKLLACL SQFMDTQQTK IRRLC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1hks_A | 7e-17 | 4 | 100 | 4 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
1hkt_A | 7e-17 | 4 | 100 | 4 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g16260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-141 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506614.1 | 1e-127 | heat stress transcription factor B-2a | ||||
TrEMBL | A0A1S3UKY9 | 1e-126 | A0A1S3UKY9_VIGRR; heat stress transcription factor B-2a | ||||
STRING | GLYMA01G34490.1 | 1e-107 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 2e-37 | heat shock factor 4 |