PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g16080.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 210aa MW: 22947.5 Da PI: 8.8272

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g16080.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.1	2.9e-36	48	105	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++++lkcprCdstntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++ Vradi07g16080.1 48 PSESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKR 105 67899**********************************************9976554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-18	48	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.5E-32	51	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.465	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MGLSSKQVSS SGLDWKQTLL EAQDLELPKP NLMRKQQQHH QQQTQTQPSE SLKCPRCDST 60 NTKFCYYNNY NKSQPRHFCR ACKRHWTKGG TLRNVPVGGG RKNKRVKKPN TPTPSSTTAT 120 TTPTTASPST CTATVTTSIG NMDALLAEEP TINSTAIAPS TGGTNTQPWE IAATSGVGLG 180 TSNFWNWEDF DSLVSTDLKD PWDDSDIKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g16080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014507299.1	9e-76	dof zinc finger protein DOF3.4-like
TrEMBL	A0A1S3UMX2	2e-74	A0A1S3UMX2_VIGRR; dof zinc finger protein DOF3.4-like
STRING	AES63808	7e-75	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-24	DOF zinc finger protein 1