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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vradi07g16030.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
NAC |
Protein Properties |
Length: 354aa MW: 39208.7 Da PI: 8.7444 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vradi07g16030.1 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 173.2 | 8e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
lppGfrFhPtdeelvv+yLk+k+++++l++ +i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l+
Vradi07g16030.1 15 LPPGFRFHPTDEELVVHYLKRKASSTPLPV-AIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPILT 107
79****************************.88***************8888999**************************************9 PP
NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl
Vradi07g16030.1 108 SdGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 142
967788***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 354 aa
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to blast |
MDSTDSSSGS QHPHLPPGFR FHPTDEELVV HYLKRKASST PLPVAIIADV DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGVRPNRA ATSGYWKATG TDKPILTSDG HQKVGVKKAL 120 VFYGGKPPKG VKTNWIMHEY RLVHDSFNST SKPPPLVPPN KKNSLRLDDW VLCRIYKKSN 180 STTVTRPPLM EHGEELSMEN MLPTMSTLSM ANNNTQNSKP PSSRSTSYGA LGLENDDNFF 240 DGILAVDHQS MQSGSDSHLF CPNSKGTNFP MKRALTSQQL WNETGSPGSS SSCKRFHGDL 300 NSGSSNAEDN DSFVSLLSQF PQNATFQPNA IHGSVGNGAQ RQQQFQLPGI NWN*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 5e-75 | 15 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-75 | 15 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-75 | 15 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-75 | 15 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-75 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 7e-75 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 7e-75 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 7e-75 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 7e-75 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 7e-75 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 7e-75 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 7e-75 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 5e-75 | 15 | 182 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 5e-75 | 15 | 182 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |