PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g14730.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 517aa    MW: 58143.5 Da    PI: 6.008
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g14730.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.62.5e-1071455151374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalpps.etseknsseelaalklfsevsPilk 92 
                      lv+lL++cAeav+ +d++ a+ lL++l+ +a   g+++qR+a++f+++L +rl+  + ++ ++ +pp  +  ++ s+e   a++l +e++P ++
  Vradi07g14730.1 145 LVQLLIACAEAVACRDKSHASILLSELKANALVFGSSFQRVASCFVQGLIERLNLiQPTGPVSPMPPMmNIMDTASEEMEEAFRLVYELCPHIQ 238
                      689**************************************************9944445566664440444445899999************* PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                      f+h+++N+ ++ea++ge+ vH++Df+++    +G QW  L+++La+   e   +lRiT+vg       ++l+++g+ L+ +A++lg++fef+v 
  Vradi07g14730.1 239 FGHFVTNSIVMEAFSGESFVHVVDFGMTlglrHGHQWRELMRSLANGGsERLRRLRITAVGL-----CDRLQSIGDELSVYATNLGINFEFSV- 326
                      *************************8753333889**********76637778*********.....89***********************9. PP

             GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      v k+le+l++e+++v+++E+laVn++lqlh +++es    +   +vL++v +l Pkv+v+veq+++hn++ Fl rf+e+l+yysa+fdsl++ l
  Vradi07g14730.1 327 VKKNLESLKPEDIEVREEEVLAVNSILQLHCVVKESRGALN---SVLQMVHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDVML 417
                      7********************************88877777...8************************************************* PP

             GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                      p+ + +r+k+E++++++ei+n+v+ eg  r erhe++ +Wr+r+++aGF+++p++  +++qak  l + k  +gy+v ee+g+lvlgWk++p+v
  Vradi07g14730.1 418 PKYDTKRAKMEQFYFAEEIKNIVSREGPLRMERHERVDQWRRRMSRAGFQAAPIK--MVSQAKQWLLNGKvCEGYTVVEEKGCLVLGWKSKPIV 509
                      *****************************************************96..677887766666668********************** PP

             GRAS 369 svSaWr 374
                      +vS+W+
  Vradi07g14730.1 510 AVSCWK 515
                      *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.068119496IPR005202Transcription factor GRAS
PfamPF035148.8E-105145515IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MAPPQYGALN GEIDGENLSY VFDIWATDQY SCFPLQPISE SNSCTLVLPY CDGSIRDNKR  60
VKRTVGIPVD WLGNLMSNSH SFLNTNANNC NRSRDSIPKL HFRDHIRTYT QRYLAAEAEE  120
EAPEDINSSE SDGAEEDGCH DGVRLVQLLI ACAEAVACRD KSHASILLSE LKANALVFGS  180
SFQRVASCFV QGLIERLNLI QPTGPVSPMP PMMNIMDTAS EEMEEAFRLV YELCPHIQFG  240
HFVTNSIVME AFSGESFVHV VDFGMTLGLR HGHQWRELMR SLANGGSERL RRLRITAVGL  300
CDRLQSIGDE LSVYATNLGI NFEFSVVKKN LESLKPEDIE VREEEVLAVN SILQLHCVVK  360
ESRGALNSVL QMVHGLGPKV LVMVEQDSSH NGPFFLGRFM ESLHYYSAIF DSLDVMLPKY  420
DTKRAKMEQF YFAEEIKNIV SREGPLRMER HERVDQWRRR MSRAGFQAAP IKMVSQAKQW  480
LLNGKVCEGY TVVEEKGCLV LGWKSKPIVA VSCWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5415251426378Protein SCARECROW
5b3h_A1e-5415251425377Protein SCARECROW
5b3h_D1e-5415251425377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g14730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506581.10.0DELLA protein RGL1-like
TrEMBLA0A1S3UKM30.0A0A1S3UKM3_VIGRR; DELLA protein RGL1-like
STRINGXP_007155519.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-73RGA-like 1