PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g13350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 647aa    MW: 71810.9 Da    PI: 6.2957
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g13350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.32.2e-1262626302373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      v+ L+ c++a+ s++ +++++++a+l +lasp+g+p+ R+ ayfteALa r++r +++++++ ++s++   + +e+ +al+l+++v+Pi+kf h
  Vradi07g13350.1 262 VSFLTGCVDAIGSRNVAAINQFIAKLGDLASPRGTPISRICAYFTEALAIRVTRLWPHVFHITTTSRDM-VEDDETGTALRLLNQVTPIPKFIH 354
                      7889********************************************************988777765.567888899*************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      +t N+++l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++ v++rled+
  Vradi07g13350.1 355 FTSNEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTHPPSHVRITGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-VVDRLEDV 443
                      ******************************************************....***************************.7******* PP

             GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseer 282
                      +l++L+vk++E++aVn++lqlh++l +    +   +++L l++s++P vvvv+eqea+hn++++ +r++++l+yysalfd++ e+++++es  r
  Vradi07g13350.1 444 RLWMLHVKEQETVAVNCILQLHKTLYDGSGGA--LRDFLGLIRSTNPSVVVVAEQEAEHNEARLEARVCKSLKYYSALFDCIeETGVAQESAVR 535
                      ************************95543333..589*********************************************999********* PP

             GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerl.eeaGFkpvplsekaakqaklllrkvksdgyrve....eesgslvlgWkdrpLvsvS 371
                      +k+E++  grei+n+vaceg+er erhe+++kWr++l e+ G++ + +se++++q +lll++++ + y+++    e    ++l W ++pL++vS
  Vradi07g13350.1 536 VKIEEM-YGREIKNMVACEGRERLERHESFGKWRRMLvEQGGLRCLGVSEREMSQSQLLLKMYSCESYSIKkveiEGATGVTLSWLEQPLYTVS 628
                      ******.9**************************99835689**********************999**9965544477778************ PP

             GRAS 372 aW 373
                      aW
  Vradi07g13350.1 629 AW 630
                      ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.413235607IPR005202Transcription factor GRAS
PfamPF035147.4E-124262630IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MLAGCSSSTL LSPSHRLRSE APAPFQACHF PRPSMSTQRL DLPCSTFTRK DSSSRSQPLR  60
PVGLSVEKPI EAKTSTCSLK HNIRLPPLAI TAATPLVEES IKDKSLKRLA EHDESFTNVP  120
KRKKGITERD NSGDNFWFQP GVEGNTLGGL NNTSLAFSPE EETVCFVPSE VVSHSAPFPL  180
NPWLESCVTK ITNFGEGSHR PRQHHNDHAT EGSVSNASSE SQSLRLNENA SEHEVGNGSG  240
NPYHHHEVET GEEDDHHGLE LVSFLTGCVD AIGSRNVAAI NQFIAKLGDL ASPRGTPISR  300
ICAYFTEALA IRVTRLWPHV FHITTTSRDM VEDDETGTAL RLLNQVTPIP KFIHFTSNEM  360
LLRAFEGKDR VHIIDFDIKQ GLQWPSLFQS LASRTHPPSH VRITGIGESK QELNETGDRL  420
AGFAEALNLP FEFHPVVDRL EDVRLWMLHV KEQETVAVNC ILQLHKTLYD GSGGALRDFL  480
GLIRSTNPSV VVVAEQEAEH NEARLEARVC KSLKYYSALF DCIEETGVAQ ESAVRVKIEE  540
MYGREIKNMV ACEGRERLER HESFGKWRRM LVEQGGLRCL GVSEREMSQS QLLLKMYSCE  600
SYSIKKVEIE GATGVTLSWL EQPLYTVSAW VPVDVAGTSS SFSHPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6525263210380Protein SCARECROW
5b3h_A4e-652526329379Protein SCARECROW
5b3h_D4e-652526329379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g13350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510163.10.0scarecrow-like protein 28
RefseqXP_014510164.10.0scarecrow-like protein 28
RefseqXP_022639181.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A1S3UVP20.0A0A1S3UVP2_VIGRR; scarecrow-like protein 28
STRINGXP_007155560.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein