PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g11840.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARR-B
Protein Properties Length: 563aa    MW: 62927.6 Da    PI: 6.7057
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g11840.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.81.8e-26324378156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k +++WtpeLH++Fv+aveqL  +++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Vradi07g11840.1 324 KMKVDWTPELHKKFVKAVEQL-SIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 378
                      5689*****************.9*******************************96 PP
2Response_reg25.47e-10201341109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHT..TTSEEE.EEESTTT.HHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireee..pklpii.vvtahge.eedal 87 
                      vl+ + + + +  +r  le  +y +v ++ d  eal  +  +   +++ ++ ++ +    G+++l++ +  +  +  pi  vvt+++   +++ 
  Vradi07g11840.1  20 VLLLEGDSISAAEIRAKLEAMDY-NVSTFCDENEALSAISSRPesFHIAIVEVSSSSsQGGFKFLENAKDLPtiMIFPIShVVTSNNHcLNTMM 112
                      567777778888899999*****.***************666666***********97899******99999776667752566777789**** PP

                      HHHHTTESEEEESS--HHHHHH CS
     Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                      +++ +Ga +flsKp ++++l++
  Vradi07g11840.1 113 KCIALGAVEFLSKPLSEDKLRN 134
                      *******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.7E-1416142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.9E-1516171No hitNo description
PROSITE profilePS5011022.30519140IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-620135IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.24E-721139No hitNo description
PROSITE profilePS5129412.07321380IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-26322381IPR009057Homeodomain-like
SuperFamilySSF466891.97E-17322381IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-23324378IPR006447Myb domain, plants
PfamPF002491.7E-6327376IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MVFTANDLQE WKDFPKGLKV LLLEGDSISA AEIRAKLEAM DYNVSTFCDE NEALSAISSR  60
PESFHIAIVE VSSSSSQGGF KFLENAKDLP TIMIFPISHV VTSNNHCLNT MMKCIALGAV  120
EFLSKPLSED KLRNIWQHVV HKAFSSGTSI LCESLKPVKE SLVTMLQLPT DNEQHESRVS  180
IDIEKVSKFT DNDDVLSPGN DKYPAPSTPQ LMHGTRLLDD GDCQEQTNCS TEKESGEHDG  240
ESKSVETTCG NLNAETESTP QERKSDMTLP REEVNLVDDS KVESIASQHT QKRKVLSNPD  300
KNTKSANKVG ILSDSCEIKP SRKKMKVDWT PELHKKFVKA VEQLSIDQAI PSRILELMKV  360
EGLTRHNVAS HLQKYRMHRR QIFPKEEDRK WLNQRERSYC VQRPIMAFPP YHSNRTHPMA  420
PIYPMWGQPS TQTAGMHIWS TPGYPLWQPT AEHWHWKPFP GMHADAWGCP VLPVAPPQAP  480
FPCSKNMPAL LNADATGHTF TMPQSSLEHY PAEEVVDKVV KEAVSKPWLP LPLGLKPPST  540
DSVLAELSRQ GICSIPPRSS KG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-16329378655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g11840.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510108.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_022639109.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-141APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1S3UVI70.0A0A1S3UVI7_VIGRR; two-component response regulator-like APRR2 isoform X1
STRINGXP_007155750.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-137ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]