|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Vradi07g11760.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
Family |
NAC |
Protein Properties |
Length: 344aa MW: 38700.8 Da PI: 5.1234 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vradi07g11760.1 | genome | SNU | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 169.1 | 1.5e-52 | 6 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
lppGfrFhPtdeelv +yLk+kveg ++el evi+ +d yk++Pw+Lp k + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v
Vradi07g11760.1 6 LPPGFRFHPTDEELVGYYLKRKVEGLEIEL-EVIPVIDFYKFDPWELPeKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKV 98
79****************************.99**************95344555788************************************ PP
NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ ++++g +ktLvfy grap g +tdWvmheyrl
Vradi07g11760.1 99 VCQsdPSNVTGYRKTLVFYAGRAPLGDRTDWVMHEYRL 136
*98766778***************************98 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0008283 | Biological Process | cell proliferation |
GO:0071365 | Biological Process | cellular response to auxin stimulus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MGGATLPPGF RFHPTDEELV GYYLKRKVEG LEIELEVIPV IDFYKFDPWE LPEKSFLPKR 60 DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSDPSNVTGY RKTLVFYAGR 120 APLGDRTDWV MHEYRLCDDL GQPTPSFQGG FALCRVIKKN EKASATKGEN KGKRAGSSSI 180 NGSDTSVRFS GEPFSNSGDS SSHASQLNNE SRYSSPITSP YNVAPMGEIN QASLETNPSN 240 FWISPDMILD SSKDYPQLQH AVSEYFPRYN LPSMGTQWQS VEHSETPSSF SYSNVNGEVE 300 FADTLSQIGG MSPYSREWNS MDFYGNGDVP YEDYDQINSI SYP*
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 6e-50 | 5 | 163 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-50 | 5 | 163 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-50 | 5 | 163 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-50 | 5 | 163 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-50 | 5 | 163 | 16 | 169 | NAC domain-containing protein 19 |
4dul_B | 6e-50 | 5 | 163 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP015034 | 1e-163 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |