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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g11610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 358aa MW: 39670.7 Da PI: 8.4169 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.3e-13 | 184 | 231 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L l+P + kK +Ka++Le A++Y+k+Lq Vradi07g11610.1 184 QDHVIAERKRREKLSQRFIALSALVPGL-----KKTDKATVLEDAIKYVKQLQ 231 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.955 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.1E-11 | 184 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.27E-16 | 185 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-16 | 185 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.63E-13 | 186 | 235 | No hit | No description |
SMART | SM00353 | 1.4E-14 | 187 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MTQISSTVYL PEFGMEDPTL FHQYPMDSFP FQLDDFDFES FSASPKGSSS HKRLSSESTQ 60 NSSLTQSPET SVAPPRPTKQ PKTTMSTWSA YATDMIAPKA ASSSSSKIIS FDKSSASSVS 120 SQQLYKLDAA KLLKKPKIET GYGENLDFSA VASQTFYDNN SFLDYDKHEK KAAATMARNP 180 TQAQDHVIAE RKRREKLSQR FIALSALVPG LKKTDKATVL EDAIKYVKQL QERVKILEEQ 240 TVDKTVESAI FVKRSVVFSG DDSTYSGENT DQSVPEIEAR ISGKEVLVRL HCDKHSGRTA 300 AILRELEKHN LTVQSSSFLP FGNNTLDITI VAKMGKDYCL TAKDLIRSLS QCLRQLS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 194 | ERKRRE |
2 | 190 | 195 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g11610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014505902.1 | 0.0 | transcription factor bHLH18 isoform X2 | ||||
TrEMBL | A0A1S3UIP5 | 0.0 | A0A1S3UIP5_VIGRR; transcription factor bHLH18 isoform X2 | ||||
STRING | XP_007155781.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 4e-54 | bHLH family protein |