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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g11510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 32851.7 Da PI: 7.5223 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.9 | 3.2e-10 | 14 | 51 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++++G+g ++R++k+c++rw++yl Vradi07g11510.1 14 RGPWSPEEDAKLKSYIEEHGTG----------LKRCGKSCRLRWLNYL 51 89********************..........68************97 PP | |||||||
2 | Myb_DNA-binding | 37.8 | 4.5e-12 | 58 | 100 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Vradi07g11510.1 58 GGFSEEEDNIICSLYVNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 100 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.287 | 9 | 51 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.39E-24 | 11 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-7 | 13 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-9 | 14 | 51 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-17 | 15 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.90E-9 | 16 | 100 | No hit | No description |
PROSITE profile | PS51294 | 21.082 | 52 | 106 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-10 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-11 | 58 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 59 | 106 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIE EHGTGLKRCG KSCRLRWLNY LRPNIKHGGF 60 SEEEDNIICS LYVNIGSRWS IIAAQLPGRT DNDIKNYWNT KLKKKLLGKQ RKEHHAQARR 120 AGGLKQEIKR ESGDMMLPVG VISRTPHWSY EQNSWPIPLA NAYSHLNNQT SSIVHIPDST 180 VTAIMNSQYS SFDISLTQDQ LYPSTVNTIT TDTCHTSNVF QGFGSFSSDL ACVDPQHIDG 240 SEGLFYGSTN TTSTESTSWG DISSLVSHYE ACQQRILPQE VTFEGSSYFA MQT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 14 | 106 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g11510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022640223.1 | 0.0 | transcription factor RAX3 | ||||
Swissprot | Q9M2Y9 | 5e-75 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A3Q0F8R6 | 0.0 | A0A3Q0F8R6_VIGRR; transcription factor RAX3 | ||||
STRING | XP_007155794.1 | 1e-179 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 8e-68 | myb domain protein 84 |
Publications ? help Back to Top | |||
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