 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vradi07g11160.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
LBD |
| Protein Properties |
Length: 233aa MW: 25487.2 Da PI: 8.4259 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi07g11160.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 98.3 | 7.8e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+C++C+vlr++C+++Cvl+p++ ++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q
Vradi07g11160.1 2 SCNGCRVLRKGCSESCVLRPCLqwietSEAQGHATVFVAKFFGRADLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQ 95
6*********************9998777889************************************************************** PP
DUF260 90 lkaelall 97
+++e++l+
Vradi07g11160.1 96 AAVETVLR 103
**998876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSESCVLR PCLQWIETSE AQGHATVFVA KFFGRADLMS FISNVPENQR 60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELMGLSSPA 120
SAVDETSEVA CSDIWRIRDP NPTCGLANTR SHNRVSSASK RKRLEEPAKL QAAPNLDLRL 180
TPIFLQKKVE NRRPVSPSMT SEESGTTTAC LESKFGDQWG YSGDRKVLNL FI*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
