PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g10830.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 289aa    MW: 31053.3 Da    PI: 9.0746
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g10830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding635.9e-201358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+++G+++W++I+r ++ gR++k+c++rw + 
  Vradi07g10830.1 13 KGPWSPEEDEALQKLVERHGPRNWSLISRSIP-GRSGKSCRLRWCNQ 58
                     79******************************.***********985 PP
2Myb_DNA-binding54.13.5e-1767109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
  Vradi07g10830.1  67 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 109
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.528863IPR017930Myb domain
SuperFamilySSF466892.58E-3210106IPR009057Homeodomain-like
SMARTSM007171.9E-171261IPR001005SANT/Myb domain
PfamPF002495.3E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-261466IPR009057Homeodomain-like
CDDcd001677.55E-171557No hitNo description
SMARTSM007172.9E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129420.75765114IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2367113IPR009057Homeodomain-like
CDDcd001679.14E-1267110No hitNo description
PfamPF002491.1E-1467109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MMTVSRKDMD RIKGPWSPEE DEALQKLVER HGPRNWSLIS RSIPGRSGKS CRLRWCNQLS  60
PQVEHRAFTP EEDDTIIRAH ARFGNKWATI ARLLSGRTDN AIKNHWNSTL KRKCASIMIA  120
EDPAAAAAGF SPQPLKRSVS AGAALPPGSP SGSDVSETSA PGVVSPSHVF RPVPVRPVVE  180
TASSCDDGPT TSLSLSLPGV ESSEASNRAP AMQANPFIIA PVTTVASPAA EVGMGALNLS  240
AEFMAVMQEM IKKEVRSYME QQSAMCFQGV DGFRNVSVKR IGISRVDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-41121143105C-Myb DNA-Binding Domain
1msf_C4e-41121143105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g10830.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505860.10.0transcription factor MYB44
SwissprotO231603e-95MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A1S3UIK80.0A0A1S3UIK8_VIGRR; transcription factor MYB44
STRINGXP_007155887.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-92myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]