PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TALE

Protein Properties

Length: 419aa MW: 44714.2 Da PI: 8.7093

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g09880.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.3	7e-05	296	342	19	52
HHH..SSS--HHHHHHHHHHC...........TS-HHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkkl...........gLterqVkvWFqNrR 52 Fe ++yps +++ LA+++ +++ qV++WF N R Vradi07g09880.1 296 FEHflHPYPSDADKHLLARQTglsrnqvvdglNVSLVQVSNWFINAR 342 6644599**************99999999988888899999999998 PP
2	BELL	97.2	1.4e-31	169	227	14	72
BELL 14 slleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 sl + Vd+rY++y+eq+++v++sF++v+g gsa pYt+lA+ka+SrhFrcLkdai+ q+ Vradi07g09880.1 169 SLSKDVDRRYSHYCEQMHMVVNSFDMVMGFGSAVPYTALAQKAMSRHFRCLKDAITAQL 227 68899***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.0E-50	111	225	IPR006563	POX domain
Pfam	PF07526	7.1E-8	117	168	IPR006563	POX domain
Pfam	PF07526	2.6E-26	169	224	IPR006563	POX domain
PROSITE profile	PS50071	9.361	274	348	IPR001356	Homeobox domain
SMART	SM00389	0.0011	277	352	IPR001356	Homeobox domain
CDD	cd00086	2.82E-9	277	342	No hit	No description
SuperFamily	SSF46689	9.98E-11	278	343	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.9E-21	280	342	IPR009057	Homeodomain-like
Pfam	PF05920	1.5E-15	294	342	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MLLPTFPPGS GGSFGQFTWL PDTAQDGGGP STVVEGPGHG QGLSLSLSSS LEAAKAEELR 60 MGDSGFLYYN QASGGPSSYK SALGGHHHQA LLGQTHQGHV GFAASSSTSS LGVVNALRNS 120 KYIKAAQELL EEFCSVGRGQ FKKNKFNRQL SNPSSNLGGS GGGGGASSSL SKDVDRRYSH 180 YCEQMHMVVN SFDMVMGFGS AVPYTALAQK AMSRHFRCLK DAITAQLKHS CELLGEKDGA 240 GNSGLTKGET PRLKMLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL 300 HPYPSDADKH LLARQTGLSR NQVVDGLNVS LVQVSNWFIN ARVAPPSELP RSMGADDSCR 360 HGSLVAAEFG TGPGASDIGS TLIRFGTTAG DVSLTLGLRH SGNMPEKTPF SVRDFGGI*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MLLPTFPPGS GGSFGQFTWL PDTAQDGGGP STVVEGPGHG QGLSLSLSSS LEAAKAEELR  60
MGDSGFLYYN QASGGPSSYK SALGGHHHQA LLGQTHQGHV GFAASSSTSS LGVVNALRNS  120
KYIKAAQELL EEFCSVGRGQ FKKNKFNRQL SNPSSNLGGS GGGGGASSSL SKDVDRRYSH  180
YCEQMHMVVN SFDMVMGFGS AVPYTALAQK AMSRHFRCLK DAITAQLKHS CELLGEKDGA  240
GNSGLTKGET PRLKMLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL  300
HPYPSDADKH LLARQTGLSR NQVVDGLNVS LVQVSNWFIN ARVAPPSELP RSMGADDSCR  360
HGSLVAAEFG TGPGASDIGS TLIRFGTTAG DVSLTLGLRH SGNMPEKTPF SVRDFGGI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g09880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014509250.1	0.0	BEL1-like homeodomain protein 4
Refseq	XP_014509251.1	0.0	BEL1-like homeodomain protein 4
Refseq	XP_014509252.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-114	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A151R8S3	0.0	A0A151R8S3_CAJCA; BEL1-like homeodomain protein 4
STRING	XP_007156003.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-119	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]