PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g09880.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 419aa    MW: 44714.2 Da    PI: 8.7093
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g09880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.37e-052963421952
                      HHH..SSS--HHHHHHHHHHC...........TS-HHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkkl...........gLterqVkvWFqNrR 52 
                      Fe   ++yps +++  LA+++           +++  qV++WF N R
  Vradi07g09880.1 296 FEHflHPYPSDADKHLLARQTglsrnqvvdglNVSLVQVSNWFINAR 342
                      6644599**************99999999988888899999999998 PP
2BELL97.21.4e-311692271472
             BELL  14 slleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      sl + Vd+rY++y+eq+++v++sF++v+g gsa pYt+lA+ka+SrhFrcLkdai+ q+
  Vradi07g09880.1 169 SLSKDVDRRYSHYCEQMHMVVNSFDMVMGFGSAVPYTALAQKAMSRHFRCLKDAITAQL 227
                      68899***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-50111225IPR006563POX domain
PfamPF075267.1E-8117168IPR006563POX domain
PfamPF075262.6E-26169224IPR006563POX domain
PROSITE profilePS500719.361274348IPR001356Homeobox domain
SMARTSM003890.0011277352IPR001356Homeobox domain
CDDcd000862.82E-9277342No hitNo description
SuperFamilySSF466899.98E-11278343IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-21280342IPR009057Homeodomain-like
PfamPF059201.5E-15294342IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MLLPTFPPGS GGSFGQFTWL PDTAQDGGGP STVVEGPGHG QGLSLSLSSS LEAAKAEELR  60
MGDSGFLYYN QASGGPSSYK SALGGHHHQA LLGQTHQGHV GFAASSSTSS LGVVNALRNS  120
KYIKAAQELL EEFCSVGRGQ FKKNKFNRQL SNPSSNLGGS GGGGGASSSL SKDVDRRYSH  180
YCEQMHMVVN SFDMVMGFGS AVPYTALAQK AMSRHFRCLK DAITAQLKHS CELLGEKDGA  240
GNSGLTKGET PRLKMLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL  300
HPYPSDADKH LLARQTGLSR NQVVDGLNVS LVQVSNWFIN ARVAPPSELP RSMGADDSCR  360
HGSLVAAEFG TGPGASDIGS TLIRFGTTAG DVSLTLGLRH SGNMPEKTPF SVRDFGGI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g09880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014509250.10.0BEL1-like homeodomain protein 4
RefseqXP_014509251.10.0BEL1-like homeodomain protein 4
RefseqXP_014509252.10.0BEL1-like homeodomain protein 4
SwissprotQ9SW801e-114BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A151R8S30.0A0A151R8S3_CAJCA; BEL1-like homeodomain protein 4
STRINGXP_007156003.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-119BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]