PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g08850.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 320aa    MW: 37238.1 Da    PI: 6.6288
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g08850.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.4e-17444343
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     ie +  r++tf kR+ng++KK +E S+LC ++v viif+s+
  Vradi07g08850.1  4 IEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASK 44
                     899999********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-10154IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.428144IPR002100Transcription factor, MADS-box
CDDcd001201.25E-17144No hitNo description
SuperFamilySSF554551.19E-17279IPR002100Transcription factor, MADS-box
PfamPF003191.2E-18442IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDLIEKEKAR KTTFQKRKNG LMKKVYEFST LCSVDVGVII FASKFLDEPE IWPQEPRELK  60
RVIQKYLNTT SDRRPKVYDV EEYFDERMKR IEGEISKVHK GKIQLMYPTW DDSYNTLEEE  120
QLRMFVSILD AKLDACNHRM NMFKRDSKGK VIEESDNDEA LVPYLAPTLG SHLSFMQNMS  180
QTQVFPTNDN NQVPFYPCHL SQTSLPSFFQ LGQNFTQLID KNIAVDWNNQ VGAIDHKMNT  240
QQDDRTNKNQ NSSSCYYNAN IQTMQPYNDV ALQTLPVQLQ CDATFQSLSN RPGPSQGFEP  300
NDVSNMLQPH FLNYMHRRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g08850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506429.10.0floral homeotic protein GLOBOSA-like
TrEMBLA0A1S3UKG70.0A0A1S3UKG7_VIGRR; floral homeotic protein GLOBOSA-like
STRINGXP_007158806.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-21M-type_MADS family protein